Gene : Pp3c14_16830 P. patens v3.3
Defline:  (1 of 1) PTHR12297:SF3 - HIG1 DOMAIN FAMILY MEMBER 2A Genomic Order:  833
Name:  ? Pp3c14_16830 Secondary Identifier:  ? PAC:32959880
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_16830 0.5kb upstream 0.5kb upstream 2934 true Chr14: 11043097-11046030 Physcomitrium patens
Pp3c14_16830 0.5kb upstream 0.5kb upstream 500 false Chr14: 11045531-11046030 Physcomitrium patens
Pp3c14_16830 0.5kb downstream 0.5kb downstream 2934 true Chr14: 11042597-11045530 Physcomitrium patens
Pp3c14_16830 0.5kb downstream 0.5kb downstream 500 false Chr14: 11042597-11043096 Physcomitrium patens
Pp3c14_16830 1.0kb upstream 1.0kb upstream 3434 true Chr14: 11043097-11046530 Physcomitrium patens
Pp3c14_16830 1.0kb upstream 1.0kb upstream 1000 false Chr14: 11045531-11046530 Physcomitrium patens
Pp3c14_16830 1.0kb downstream 1.0kb downstream 3434 true Chr14: 11042097-11045530 Physcomitrium patens
Pp3c14_16830 1.0kb downstream 1.0kb downstream 1000 false Chr14: 11042097-11043096 Physcomitrium patens
Pp3c14_16830 2.0kb upstream 2.0kb upstream 4434 true Chr14: 11043097-11047530 Physcomitrium patens
Pp3c14_16830 2.0kb upstream 2.0kb upstream 2000 false Chr14: 11045531-11047530 Physcomitrium patens
Pp3c14_16830 2.0kb downstream 2.0kb downstream 4434 true Chr14: 11041097-11045530 Physcomitrium patens
Pp3c14_16830 2.0kb downstream 2.0kb downstream 2000 false Chr14: 11041097-11043096 Physcomitrium patens
Pp3c14_16830 5.0kb upstream 5.0kb upstream 7434 true Chr14: 11043097-11050530 Physcomitrium patens
Pp3c14_16830 5.0kb upstream 5.0kb upstream 5000 false Chr14: 11045531-11050530 Physcomitrium patens
Pp3c14_16830 5.0kb downstream 5.0kb downstream 7434 true Chr14: 11038097-11045530 Physcomitrium patens
Pp3c14_16830 5.0kb downstream 5.0kb downstream 5000 false Chr14: 11038097-11043096 Physcomitrium patens
Pp3c14_16830 10.0kb upstream 10.0kb upstream 12434 true Chr14: 11043097-11055530 Physcomitrium patens
Pp3c14_16830 10.0kb upstream 10.0kb upstream 10000 false Chr14: 11045531-11055530 Physcomitrium patens
Pp3c14_16830 10.0kb downstream 10.0kb downstream 12434 true Chr14: 11033097-11045530 Physcomitrium patens
Pp3c14_16830 10.0kb downstream 10.0kb downstream 10000 false Chr14: 11033097-11043096 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347874 5274 Embryophyte View MSA
123423754 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.559        
cufflinks 2.725       High
cufflinks 1.23        
cufflinks 3.77       High
cufflinks 0.934       Low
cufflinks 3.439       High
cufflinks 1.488        
cufflinks 3.906       High
cufflinks 2.547        
cufflinks 4.514       High
cufflinks 1.731        
cufflinks 1.171        
cufflinks 0.568       Low
cufflinks 1.19        
cufflinks 1.465        
cufflinks 1.223        
cufflinks 1.07        
cufflinks 1.476        
cufflinks 1.643        
cufflinks 1.089        
cufflinks 2.575        
cufflinks 0.899       Low
cufflinks 1.16        
cufflinks 2.595        
cufflinks 0.782       Low
cufflinks 2.236        
cufflinks 0.977        
cufflinks 1.834        
cufflinks 1.382        
cufflinks 1.932        

0 Strain