Gene : Pp3c13_10870 P. patens v3.3
Defline:  (1 of 3) PTHR28661:SF1 - SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 Genomic Order:  443
Name:  ? Pp3c13_10870 Secondary Identifier:  ? PAC:32930344
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_10870 0.5kb upstream 0.5kb upstream 3012 true Chr13: 7797558-7800569 Physcomitrium patens
Pp3c13_10870 0.5kb upstream 0.5kb upstream 500 false Chr13: 7797558-7798057 Physcomitrium patens
Pp3c13_10870 0.5kb downstream 0.5kb downstream 3012 true Chr13: 7798058-7801069 Physcomitrium patens
Pp3c13_10870 0.5kb downstream 0.5kb downstream 500 false Chr13: 7800570-7801069 Physcomitrium patens
Pp3c13_10870 1.0kb upstream 1.0kb upstream 3512 true Chr13: 7797058-7800569 Physcomitrium patens
Pp3c13_10870 1.0kb upstream 1.0kb upstream 1000 false Chr13: 7797058-7798057 Physcomitrium patens
Pp3c13_10870 1.0kb downstream 1.0kb downstream 3512 true Chr13: 7798058-7801569 Physcomitrium patens
Pp3c13_10870 1.0kb downstream 1.0kb downstream 1000 false Chr13: 7800570-7801569 Physcomitrium patens
Pp3c13_10870 2.0kb upstream 2.0kb upstream 4512 true Chr13: 7796058-7800569 Physcomitrium patens
Pp3c13_10870 2.0kb upstream 2.0kb upstream 2000 false Chr13: 7796058-7798057 Physcomitrium patens
Pp3c13_10870 2.0kb downstream 2.0kb downstream 4512 true Chr13: 7798058-7802569 Physcomitrium patens
Pp3c13_10870 2.0kb downstream 2.0kb downstream 2000 false Chr13: 7800570-7802569 Physcomitrium patens
Pp3c13_10870 5.0kb upstream 5.0kb upstream 7512 true Chr13: 7793058-7800569 Physcomitrium patens
Pp3c13_10870 5.0kb upstream 5.0kb upstream 5000 false Chr13: 7793058-7798057 Physcomitrium patens
Pp3c13_10870 5.0kb downstream 5.0kb downstream 7512 true Chr13: 7798058-7805569 Physcomitrium patens
Pp3c13_10870 5.0kb downstream 5.0kb downstream 5000 false Chr13: 7800570-7805569 Physcomitrium patens
Pp3c13_10870 10.0kb upstream 10.0kb upstream 12512 true Chr13: 7788058-7800569 Physcomitrium patens
Pp3c13_10870 10.0kb upstream 10.0kb upstream 10000 false Chr13: 7788058-7798057 Physcomitrium patens
Pp3c13_10870 10.0kb downstream 10.0kb downstream 12512 true Chr13: 7798058-7810569 Physcomitrium patens
Pp3c13_10870 10.0kb downstream 10.0kb downstream 10000 false Chr13: 7800570-7810569 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342757 5274 Embryophyte View MSA
123427012 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain