Gene : Pp3c14_1520 P. patens v3.3
Defline:  (1 of 2) PTHR11817:SF28 - PLASTIDIAL PYRUVATE KINASE 4, CHLOROPLASTIC Genomic Order:  56
Name:  ? Pp3c14_1520 Secondary Identifier:  ? PAC:32961502
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens ANAEROFRUCAT-PWY Physcomitrium patens pathologic  
Ppatens ANAGLYCOLYSIS-PWY Physcomitrium patens pathologic  
Ppatens GLYCOLYSIS Physcomitrium patens pathologic  
Ppatens PWY-1042 Physcomitrium patens pathologic  
Ppatens PWY-5464 Physcomitrium patens pathologic  
Ppatens PWY-5723 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_1520 0.5kb upstream 0.5kb upstream 6172 true Chr14: 1096131-1102302 Physcomitrium patens
Pp3c14_1520 0.5kb upstream 0.5kb upstream 500 false Chr14: 1096131-1096630 Physcomitrium patens
Pp3c14_1520 0.5kb downstream 0.5kb downstream 6172 true Chr14: 1096631-1102802 Physcomitrium patens
Pp3c14_1520 0.5kb downstream 0.5kb downstream 500 false Chr14: 1102303-1102802 Physcomitrium patens
Pp3c14_1520 1.0kb upstream 1.0kb upstream 6672 true Chr14: 1095631-1102302 Physcomitrium patens
Pp3c14_1520 1.0kb upstream 1.0kb upstream 1000 false Chr14: 1095631-1096630 Physcomitrium patens
Pp3c14_1520 1.0kb downstream 1.0kb downstream 6672 true Chr14: 1096631-1103302 Physcomitrium patens
Pp3c14_1520 1.0kb downstream 1.0kb downstream 1000 false Chr14: 1102303-1103302 Physcomitrium patens
Pp3c14_1520 2.0kb upstream 2.0kb upstream 7672 true Chr14: 1094631-1102302 Physcomitrium patens
Pp3c14_1520 2.0kb upstream 2.0kb upstream 2000 false Chr14: 1094631-1096630 Physcomitrium patens
Pp3c14_1520 2.0kb downstream 2.0kb downstream 7672 true Chr14: 1096631-1104302 Physcomitrium patens
Pp3c14_1520 2.0kb downstream 2.0kb downstream 2000 false Chr14: 1102303-1104302 Physcomitrium patens
Pp3c14_1520 5.0kb upstream 5.0kb upstream 10672 true Chr14: 1091631-1102302 Physcomitrium patens
Pp3c14_1520 5.0kb upstream 5.0kb upstream 5000 false Chr14: 1091631-1096630 Physcomitrium patens
Pp3c14_1520 5.0kb downstream 5.0kb downstream 10672 true Chr14: 1096631-1107302 Physcomitrium patens
Pp3c14_1520 5.0kb downstream 5.0kb downstream 5000 false Chr14: 1102303-1107302 Physcomitrium patens
Pp3c14_1520 10.0kb upstream 10.0kb upstream 15672 true Chr14: 1086631-1102302 Physcomitrium patens
Pp3c14_1520 10.0kb upstream 10.0kb upstream 10000 false Chr14: 1086631-1096630 Physcomitrium patens
Pp3c14_1520 10.0kb downstream 10.0kb downstream 15672 true Chr14: 1096631-1112302 Physcomitrium patens
Pp3c14_1520 10.0kb downstream 10.0kb downstream 10000 false Chr14: 1102303-1112302 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346943 5274 Embryophyte View MSA
123380469 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.777        
cufflinks 0.594        
cufflinks 0.644        
cufflinks 6.355       High
cufflinks 4.946        
cufflinks 1.206        
cufflinks 0.716        
cufflinks 1.414        
cufflinks 2.223        
cufflinks 1.111        
cufflinks 1.316        
cufflinks 5.388       High
cufflinks 0.288       Low
cufflinks 6.42       High
cufflinks 0.624        
cufflinks 3.126        
cufflinks 0.571        
cufflinks 0.349       Low
cufflinks 1.391        
cufflinks 7.336       High
cufflinks 1.16        
cufflinks 4.832        
cufflinks 1.849        
cufflinks 1.123        
cufflinks 3.215        
cufflinks 7.273       High
cufflinks 0.457        
cufflinks 0.055     Low Low
cufflinks 0.087       Low
cufflinks 12.414       High

0 Strain