Gene : Pp3c14_1880 P. patens v3.3
Defline:  (1 of 1) PTHR12586 - CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE Genomic Order:  72
Name:  ? Pp3c14_1880 Secondary Identifier:  ? PAC:32962653
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY4FS-7 Physcomitrium patens pathologic  
Ppatens PWY-5269 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_1880 0.5kb upstream 0.5kb upstream 3739 true Chr14: 1315252-1318990 Physcomitrium patens
Pp3c14_1880 0.5kb upstream 0.5kb upstream 500 false Chr14: 1315252-1315751 Physcomitrium patens
Pp3c14_1880 0.5kb downstream 0.5kb downstream 3739 true Chr14: 1315752-1319490 Physcomitrium patens
Pp3c14_1880 0.5kb downstream 0.5kb downstream 500 false Chr14: 1318991-1319490 Physcomitrium patens
Pp3c14_1880 1.0kb upstream 1.0kb upstream 4239 true Chr14: 1314752-1318990 Physcomitrium patens
Pp3c14_1880 1.0kb upstream 1.0kb upstream 1000 false Chr14: 1314752-1315751 Physcomitrium patens
Pp3c14_1880 1.0kb downstream 1.0kb downstream 4239 true Chr14: 1315752-1319990 Physcomitrium patens
Pp3c14_1880 1.0kb downstream 1.0kb downstream 1000 false Chr14: 1318991-1319990 Physcomitrium patens
Pp3c14_1880 2.0kb upstream 2.0kb upstream 5239 true Chr14: 1313752-1318990 Physcomitrium patens
Pp3c14_1880 2.0kb upstream 2.0kb upstream 2000 false Chr14: 1313752-1315751 Physcomitrium patens
Pp3c14_1880 2.0kb downstream 2.0kb downstream 5239 true Chr14: 1315752-1320990 Physcomitrium patens
Pp3c14_1880 2.0kb downstream 2.0kb downstream 2000 false Chr14: 1318991-1320990 Physcomitrium patens
Pp3c14_1880 5.0kb upstream 5.0kb upstream 8239 true Chr14: 1310752-1318990 Physcomitrium patens
Pp3c14_1880 5.0kb upstream 5.0kb upstream 5000 false Chr14: 1310752-1315751 Physcomitrium patens
Pp3c14_1880 5.0kb downstream 5.0kb downstream 8239 true Chr14: 1315752-1323990 Physcomitrium patens
Pp3c14_1880 5.0kb downstream 5.0kb downstream 5000 false Chr14: 1318991-1323990 Physcomitrium patens
Pp3c14_1880 10.0kb upstream 10.0kb upstream 13239 true Chr14: 1305752-1318990 Physcomitrium patens
Pp3c14_1880 10.0kb upstream 10.0kb upstream 10000 false Chr14: 1305752-1315751 Physcomitrium patens
Pp3c14_1880 10.0kb downstream 10.0kb downstream 13239 true Chr14: 1315752-1328990 Physcomitrium patens
Pp3c14_1880 10.0kb downstream 10.0kb downstream 10000 false Chr14: 1318991-1328990 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343532 5274 Embryophyte View MSA
123379742 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.434        
cufflinks 4.896        
cufflinks 5.878        
cufflinks 7.399        
cufflinks 2.223       Low
cufflinks 5.055        
cufflinks 5.458        
cufflinks 8.229        
cufflinks 1.527       Low
cufflinks 6.977        
cufflinks 4.65        
cufflinks 11.376        
cufflinks 13.187       High
cufflinks 5.455        
cufflinks 4.023        
cufflinks 2.954       Low
cufflinks 9.712        
cufflinks 21.32     High High
cufflinks 8.901        
cufflinks 15.632       High
cufflinks 36.982     High High
cufflinks 1.37       Low
cufflinks 6.833        
cufflinks 5.389        
cufflinks 15.111       High
cufflinks 3.557        
cufflinks 5.247        
cufflinks 4.273        
cufflinks 3.2        
cufflinks 6.37        

0 Strain