Gene : Pp3c14_18840 P. patens v3.3
Defline:  (1 of 12) PTHR13711 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN Genomic Order:  918
Name:  ? Pp3c14_18840 Secondary Identifier:  ? PAC:32961799
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_18840 0.5kb upstream 0.5kb upstream 1787 true Chr14: 12556737-12558523 Physcomitrium patens
Pp3c14_18840 0.5kb upstream 0.5kb upstream 500 false Chr14: 12556737-12557236 Physcomitrium patens
Pp3c14_18840 0.5kb downstream 0.5kb downstream 1787 true Chr14: 12557237-12559023 Physcomitrium patens
Pp3c14_18840 0.5kb downstream 0.5kb downstream 500 false Chr14: 12558524-12559023 Physcomitrium patens
Pp3c14_18840 1.0kb upstream 1.0kb upstream 2287 true Chr14: 12556237-12558523 Physcomitrium patens
Pp3c14_18840 1.0kb upstream 1.0kb upstream 1000 false Chr14: 12556237-12557236 Physcomitrium patens
Pp3c14_18840 1.0kb downstream 1.0kb downstream 2287 true Chr14: 12557237-12559523 Physcomitrium patens
Pp3c14_18840 1.0kb downstream 1.0kb downstream 1000 false Chr14: 12558524-12559523 Physcomitrium patens
Pp3c14_18840 2.0kb upstream 2.0kb upstream 3287 true Chr14: 12555237-12558523 Physcomitrium patens
Pp3c14_18840 2.0kb upstream 2.0kb upstream 2000 false Chr14: 12555237-12557236 Physcomitrium patens
Pp3c14_18840 2.0kb downstream 2.0kb downstream 3287 true Chr14: 12557237-12560523 Physcomitrium patens
Pp3c14_18840 2.0kb downstream 2.0kb downstream 2000 false Chr14: 12558524-12560523 Physcomitrium patens
Pp3c14_18840 5.0kb upstream 5.0kb upstream 6287 true Chr14: 12552237-12558523 Physcomitrium patens
Pp3c14_18840 5.0kb upstream 5.0kb upstream 5000 false Chr14: 12552237-12557236 Physcomitrium patens
Pp3c14_18840 5.0kb downstream 5.0kb downstream 6287 true Chr14: 12557237-12563523 Physcomitrium patens
Pp3c14_18840 5.0kb downstream 5.0kb downstream 5000 false Chr14: 12558524-12563523 Physcomitrium patens
Pp3c14_18840 10.0kb upstream 10.0kb upstream 11287 true Chr14: 12547237-12558523 Physcomitrium patens
Pp3c14_18840 10.0kb upstream 10.0kb upstream 10000 false Chr14: 12547237-12557236 Physcomitrium patens
Pp3c14_18840 10.0kb downstream 10.0kb downstream 11287 true Chr14: 12557237-12568523 Physcomitrium patens
Pp3c14_18840 10.0kb downstream 10.0kb downstream 10000 false Chr14: 12558524-12568523 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351364 5274 Embryophyte View MSA
123382139 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low Low
cufflinks 0.072     Low  
cufflinks 0.039     Low  
cufflinks 0.144       High
cufflinks 0.089     Low  
cufflinks 0.013     Low Low
cufflinks 0.093        
cufflinks 0.133       High
cufflinks 0.051     Low  
cufflinks 0.097        
cufflinks 0.094        
cufflinks 0.116       High
cufflinks 0.092        
cufflinks 0.043     Low  
cufflinks 0.084        
cufflinks 0.029     Low  
cufflinks 0.044     Low  
cufflinks 0.029     Low  
cufflinks 0.012     Low Low
cufflinks 0.049     Low  
cufflinks 0.04     Low  
cufflinks 0.036     Low  
cufflinks 0.079        
cufflinks 0.06     Low  
cufflinks 0.043     Low  
cufflinks 0.099        
cufflinks 0.045     Low  
cufflinks 0.287       High
cufflinks 0.02     Low Low
cufflinks 0.031     Low  

0 Strain