Gene : Pp3c14_6180 P. patens v3.3
Defline:  (1 of 1) KOG3487 - TRAPP 20 K subunit Genomic Order:  294
Name:  ? Pp3c14_6180 Secondary Identifier:  ? PAC:32960637
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_6180 0.5kb upstream 0.5kb upstream 4611 true Chr14: 4235120-4239730 Physcomitrium patens
Pp3c14_6180 0.5kb upstream 0.5kb upstream 500 false Chr14: 4235120-4235619 Physcomitrium patens
Pp3c14_6180 0.5kb downstream 0.5kb downstream 4611 true Chr14: 4235620-4240230 Physcomitrium patens
Pp3c14_6180 0.5kb downstream 0.5kb downstream 500 false Chr14: 4239731-4240230 Physcomitrium patens
Pp3c14_6180 1.0kb upstream 1.0kb upstream 5111 true Chr14: 4234620-4239730 Physcomitrium patens
Pp3c14_6180 1.0kb upstream 1.0kb upstream 1000 false Chr14: 4234620-4235619 Physcomitrium patens
Pp3c14_6180 1.0kb downstream 1.0kb downstream 5111 true Chr14: 4235620-4240730 Physcomitrium patens
Pp3c14_6180 1.0kb downstream 1.0kb downstream 1000 false Chr14: 4239731-4240730 Physcomitrium patens
Pp3c14_6180 2.0kb upstream 2.0kb upstream 6111 true Chr14: 4233620-4239730 Physcomitrium patens
Pp3c14_6180 2.0kb upstream 2.0kb upstream 2000 false Chr14: 4233620-4235619 Physcomitrium patens
Pp3c14_6180 2.0kb downstream 2.0kb downstream 6111 true Chr14: 4235620-4241730 Physcomitrium patens
Pp3c14_6180 2.0kb downstream 2.0kb downstream 2000 false Chr14: 4239731-4241730 Physcomitrium patens
Pp3c14_6180 5.0kb upstream 5.0kb upstream 9111 true Chr14: 4230620-4239730 Physcomitrium patens
Pp3c14_6180 5.0kb upstream 5.0kb upstream 5000 false Chr14: 4230620-4235619 Physcomitrium patens
Pp3c14_6180 5.0kb downstream 5.0kb downstream 9111 true Chr14: 4235620-4244730 Physcomitrium patens
Pp3c14_6180 5.0kb downstream 5.0kb downstream 5000 false Chr14: 4239731-4244730 Physcomitrium patens
Pp3c14_6180 10.0kb upstream 10.0kb upstream 14111 true Chr14: 4225620-4239730 Physcomitrium patens
Pp3c14_6180 10.0kb upstream 10.0kb upstream 10000 false Chr14: 4225620-4235619 Physcomitrium patens
Pp3c14_6180 10.0kb downstream 10.0kb downstream 14111 true Chr14: 4235620-4249730 Physcomitrium patens
Pp3c14_6180 10.0kb downstream 10.0kb downstream 10000 false Chr14: 4239731-4249730 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429051 5275 Viridiplantae View MSA
121344946 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.98       Low
cufflinks 17.279        
cufflinks 27.192     High  
cufflinks 26.809     High  
cufflinks 41.572     High High
cufflinks 17.27        
cufflinks 19.034     High  
cufflinks 27.075     High  
cufflinks 18.052     High  
cufflinks 19.213        
cufflinks 17.478        
cufflinks 26.198     High  
cufflinks 22.755     High  
cufflinks 23.041     High  
cufflinks 20.182     High  
cufflinks 27.843     High High
cufflinks 16.199       Low
cufflinks 24.814     High  
cufflinks 23.555     High  
cufflinks 32.11     High High
cufflinks 16.759        
cufflinks 13.554       Low
cufflinks 17.42        
cufflinks 27.413     High  
cufflinks 22.117     High  
cufflinks 18.782        
cufflinks 17.337     High  
cufflinks 20.382        
cufflinks 34.14     High High
cufflinks 23.078     High  

0 Strain