Gene : Pp3c14_6050 P. patens v3.3
Defline:  (1 of 2) PTHR12496 - CGI-41 METHYLTRANSFERASE Genomic Order:  287
Name:  ? Pp3c14_6050 Secondary Identifier:  ? PAC:32960528
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_6050 0.5kb upstream 0.5kb upstream 5566 true Chr14: 4152462-4158027 Physcomitrium patens
Pp3c14_6050 0.5kb upstream 0.5kb upstream 500 false Chr14: 4152462-4152961 Physcomitrium patens
Pp3c14_6050 0.5kb downstream 0.5kb downstream 5566 true Chr14: 4152962-4158527 Physcomitrium patens
Pp3c14_6050 0.5kb downstream 0.5kb downstream 500 false Chr14: 4158028-4158527 Physcomitrium patens
Pp3c14_6050 1.0kb upstream 1.0kb upstream 6066 true Chr14: 4151962-4158027 Physcomitrium patens
Pp3c14_6050 1.0kb upstream 1.0kb upstream 1000 false Chr14: 4151962-4152961 Physcomitrium patens
Pp3c14_6050 1.0kb downstream 1.0kb downstream 6066 true Chr14: 4152962-4159027 Physcomitrium patens
Pp3c14_6050 1.0kb downstream 1.0kb downstream 1000 false Chr14: 4158028-4159027 Physcomitrium patens
Pp3c14_6050 2.0kb upstream 2.0kb upstream 7066 true Chr14: 4150962-4158027 Physcomitrium patens
Pp3c14_6050 2.0kb upstream 2.0kb upstream 2000 false Chr14: 4150962-4152961 Physcomitrium patens
Pp3c14_6050 2.0kb downstream 2.0kb downstream 7066 true Chr14: 4152962-4160027 Physcomitrium patens
Pp3c14_6050 2.0kb downstream 2.0kb downstream 2000 false Chr14: 4158028-4160027 Physcomitrium patens
Pp3c14_6050 5.0kb upstream 5.0kb upstream 10066 true Chr14: 4147962-4158027 Physcomitrium patens
Pp3c14_6050 5.0kb upstream 5.0kb upstream 5000 false Chr14: 4147962-4152961 Physcomitrium patens
Pp3c14_6050 5.0kb downstream 5.0kb downstream 10066 true Chr14: 4152962-4163027 Physcomitrium patens
Pp3c14_6050 5.0kb downstream 5.0kb downstream 5000 false Chr14: 4158028-4163027 Physcomitrium patens
Pp3c14_6050 10.0kb upstream 10.0kb upstream 15066 true Chr14: 4142962-4158027 Physcomitrium patens
Pp3c14_6050 10.0kb upstream 10.0kb upstream 10000 false Chr14: 4142962-4152961 Physcomitrium patens
Pp3c14_6050 10.0kb downstream 10.0kb downstream 15066 true Chr14: 4152962-4168027 Physcomitrium patens
Pp3c14_6050 10.0kb downstream 10.0kb downstream 10000 false Chr14: 4158028-4168027 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344340 5274 Embryophyte View MSA
123380024 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.103       Low
cufflinks 0.217        
cufflinks 0.355       High
cufflinks 0.252        
cufflinks 0.335        
cufflinks 0.446       High
cufflinks 0.192        
cufflinks 0.24        
cufflinks 0.317        
cufflinks 0.312        
cufflinks 0.329        
cufflinks 0.411       High
cufflinks 0.33        
cufflinks 0.113       Low
cufflinks 0.234        
cufflinks 0.251        
cufflinks 0.239        
cufflinks 0.202        
cufflinks 0.226        
cufflinks 0.197        
cufflinks 0.206        
cufflinks 0.261        
cufflinks 0.147       Low
cufflinks 0.207        
cufflinks 0.27        
cufflinks 0.078       Low
cufflinks 0.256        
cufflinks 0.324        
cufflinks 0.255        
cufflinks 0.227        

0 Strain