Gene : Pp3c14_5290 P. patens v3.3
Defline:  (1 of 7) KOG0884 - Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase Genomic Order:  250
Name:  ? Pp3c14_5290 Secondary Identifier:  ? PAC:32960158
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_5290 0.5kb upstream 0.5kb upstream 3474 true Chr14: 3611205-3614678 Physcomitrium patens
Pp3c14_5290 0.5kb upstream 0.5kb upstream 500 false Chr14: 3611205-3611704 Physcomitrium patens
Pp3c14_5290 0.5kb downstream 0.5kb downstream 3474 true Chr14: 3611705-3615178 Physcomitrium patens
Pp3c14_5290 0.5kb downstream 0.5kb downstream 500 false Chr14: 3614679-3615178 Physcomitrium patens
Pp3c14_5290 1.0kb upstream 1.0kb upstream 3974 true Chr14: 3610705-3614678 Physcomitrium patens
Pp3c14_5290 1.0kb upstream 1.0kb upstream 1000 false Chr14: 3610705-3611704 Physcomitrium patens
Pp3c14_5290 1.0kb downstream 1.0kb downstream 3974 true Chr14: 3611705-3615678 Physcomitrium patens
Pp3c14_5290 1.0kb downstream 1.0kb downstream 1000 false Chr14: 3614679-3615678 Physcomitrium patens
Pp3c14_5290 2.0kb upstream 2.0kb upstream 4974 true Chr14: 3609705-3614678 Physcomitrium patens
Pp3c14_5290 2.0kb upstream 2.0kb upstream 2000 false Chr14: 3609705-3611704 Physcomitrium patens
Pp3c14_5290 2.0kb downstream 2.0kb downstream 4974 true Chr14: 3611705-3616678 Physcomitrium patens
Pp3c14_5290 2.0kb downstream 2.0kb downstream 2000 false Chr14: 3614679-3616678 Physcomitrium patens
Pp3c14_5290 5.0kb upstream 5.0kb upstream 7974 true Chr14: 3606705-3614678 Physcomitrium patens
Pp3c14_5290 5.0kb upstream 5.0kb upstream 5000 false Chr14: 3606705-3611704 Physcomitrium patens
Pp3c14_5290 5.0kb downstream 5.0kb downstream 7974 true Chr14: 3611705-3619678 Physcomitrium patens
Pp3c14_5290 5.0kb downstream 5.0kb downstream 5000 false Chr14: 3614679-3619678 Physcomitrium patens
Pp3c14_5290 10.0kb upstream 10.0kb upstream 12974 true Chr14: 3601705-3614678 Physcomitrium patens
Pp3c14_5290 10.0kb upstream 10.0kb upstream 10000 false Chr14: 3601705-3611704 Physcomitrium patens
Pp3c14_5290 10.0kb downstream 10.0kb downstream 12974 true Chr14: 3611705-3624678 Physcomitrium patens
Pp3c14_5290 10.0kb downstream 10.0kb downstream 10000 false Chr14: 3614679-3624678 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347403 5274 Embryophyte View MSA
123424024 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.943        
cufflinks 1.953        
cufflinks 1.586        
cufflinks 2.241        
cufflinks 3.241       High
cufflinks 2.079        
cufflinks 2.193        
cufflinks 2.166        
cufflinks 1.099       Low
cufflinks 2.061        
cufflinks 2.197        
cufflinks 1.951        
cufflinks 2.169        
cufflinks 3.145       High
cufflinks 1.246       Low
cufflinks 1.548       Low
cufflinks 1.786        
cufflinks 2.128        
cufflinks 1.619        
cufflinks 2.248        
cufflinks 2.848       High
cufflinks 2.648       High
cufflinks 1.564       Low
cufflinks 2.645       High
cufflinks 2.326        
cufflinks 2.466        
cufflinks 1.566       Low
cufflinks 1.861        
cufflinks 1.606        
cufflinks 2.162        

0 Strain