Gene : Pp3c15_15480 P. patens v3.3
Defline:  (1 of 5) PF06127 - Protein of unknown function (DUF962) (DUF962) Genomic Order:  722
Name:  ? Pp3c15_15480 Secondary Identifier:  ? PAC:32927177
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_15480 0.5kb upstream 0.5kb upstream 4225 true Chr15: 10130377-10134601 Physcomitrium patens
Pp3c15_15480 0.5kb upstream 0.5kb upstream 500 false Chr15: 10130377-10130876 Physcomitrium patens
Pp3c15_15480 0.5kb downstream 0.5kb downstream 4225 true Chr15: 10130877-10135101 Physcomitrium patens
Pp3c15_15480 0.5kb downstream 0.5kb downstream 500 false Chr15: 10134602-10135101 Physcomitrium patens
Pp3c15_15480 1.0kb upstream 1.0kb upstream 4725 true Chr15: 10129877-10134601 Physcomitrium patens
Pp3c15_15480 1.0kb upstream 1.0kb upstream 1000 false Chr15: 10129877-10130876 Physcomitrium patens
Pp3c15_15480 1.0kb downstream 1.0kb downstream 4725 true Chr15: 10130877-10135601 Physcomitrium patens
Pp3c15_15480 1.0kb downstream 1.0kb downstream 1000 false Chr15: 10134602-10135601 Physcomitrium patens
Pp3c15_15480 2.0kb upstream 2.0kb upstream 5725 true Chr15: 10128877-10134601 Physcomitrium patens
Pp3c15_15480 2.0kb upstream 2.0kb upstream 2000 false Chr15: 10128877-10130876 Physcomitrium patens
Pp3c15_15480 2.0kb downstream 2.0kb downstream 5725 true Chr15: 10130877-10136601 Physcomitrium patens
Pp3c15_15480 2.0kb downstream 2.0kb downstream 2000 false Chr15: 10134602-10136601 Physcomitrium patens
Pp3c15_15480 5.0kb upstream 5.0kb upstream 8725 true Chr15: 10125877-10134601 Physcomitrium patens
Pp3c15_15480 5.0kb upstream 5.0kb upstream 5000 false Chr15: 10125877-10130876 Physcomitrium patens
Pp3c15_15480 5.0kb downstream 5.0kb downstream 8725 true Chr15: 10130877-10139601 Physcomitrium patens
Pp3c15_15480 5.0kb downstream 5.0kb downstream 5000 false Chr15: 10134602-10139601 Physcomitrium patens
Pp3c15_15480 10.0kb upstream 10.0kb upstream 13725 true Chr15: 10120877-10134601 Physcomitrium patens
Pp3c15_15480 10.0kb upstream 10.0kb upstream 10000 false Chr15: 10120877-10130876 Physcomitrium patens
Pp3c15_15480 10.0kb downstream 10.0kb downstream 13725 true Chr15: 10130877-10144601 Physcomitrium patens
Pp3c15_15480 10.0kb downstream 10.0kb downstream 10000 false Chr15: 10134602-10144601 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350292 5274 Embryophyte View MSA
123424531 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.052        
cufflinks 4.389       Low
cufflinks 4.479       Low
cufflinks 5.461        
cufflinks 5.443        
cufflinks 15.788       High
cufflinks 5.435        
cufflinks 6.684        
cufflinks 4.594        
cufflinks 5.236        
cufflinks 7.13        
cufflinks 8.206        
cufflinks 11.774       High
cufflinks 8.952        
cufflinks 5.501        
cufflinks 5.899        
cufflinks 10.147       High
cufflinks 3.679       Low
cufflinks 5.732        
cufflinks 9.796        
cufflinks 9.569        
cufflinks 8.351        
cufflinks 5.627        
cufflinks 3.452       Low
cufflinks 9.713        
cufflinks 11.968       High
cufflinks 8.658        
cufflinks 10.237       High
cufflinks 3.41       Low
cufflinks 8.031        

0 Strain