Gene : Pp3c15_22580 P. patens v3.3
Defline:  (1 of 187) PTHR11439 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  1032
Name:  ? Pp3c15_22580 Secondary Identifier:  ? PAC:32927502
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_22580 0.5kb upstream 0.5kb upstream 4091 true Chr15: 14640241-14644331 Physcomitrium patens
Pp3c15_22580 0.5kb upstream 0.5kb upstream 500 false Chr15: 14643832-14644331 Physcomitrium patens
Pp3c15_22580 0.5kb downstream 0.5kb downstream 4091 true Chr15: 14639741-14643831 Physcomitrium patens
Pp3c15_22580 0.5kb downstream 0.5kb downstream 500 false Chr15: 14639741-14640240 Physcomitrium patens
Pp3c15_22580 1.0kb upstream 1.0kb upstream 4591 true Chr15: 14640241-14644831 Physcomitrium patens
Pp3c15_22580 1.0kb upstream 1.0kb upstream 1000 false Chr15: 14643832-14644831 Physcomitrium patens
Pp3c15_22580 1.0kb downstream 1.0kb downstream 4591 true Chr15: 14639241-14643831 Physcomitrium patens
Pp3c15_22580 1.0kb downstream 1.0kb downstream 1000 false Chr15: 14639241-14640240 Physcomitrium patens
Pp3c15_22580 2.0kb upstream 2.0kb upstream 5591 true Chr15: 14640241-14645831 Physcomitrium patens
Pp3c15_22580 2.0kb upstream 2.0kb upstream 2000 false Chr15: 14643832-14645831 Physcomitrium patens
Pp3c15_22580 2.0kb downstream 2.0kb downstream 5591 true Chr15: 14638241-14643831 Physcomitrium patens
Pp3c15_22580 2.0kb downstream 2.0kb downstream 2000 false Chr15: 14638241-14640240 Physcomitrium patens
Pp3c15_22580 5.0kb upstream 5.0kb upstream 8591 true Chr15: 14640241-14648831 Physcomitrium patens
Pp3c15_22580 5.0kb upstream 5.0kb upstream 5000 false Chr15: 14643832-14648831 Physcomitrium patens
Pp3c15_22580 5.0kb downstream 5.0kb downstream 8591 true Chr15: 14635241-14643831 Physcomitrium patens
Pp3c15_22580 5.0kb downstream 5.0kb downstream 5000 false Chr15: 14635241-14640240 Physcomitrium patens
Pp3c15_22580 10.0kb upstream 10.0kb upstream 13591 true Chr15: 14640241-14653831 Physcomitrium patens
Pp3c15_22580 10.0kb upstream 10.0kb upstream 10000 false Chr15: 14643832-14653831 Physcomitrium patens
Pp3c15_22580 10.0kb downstream 10.0kb downstream 13591 true Chr15: 14630241-14643831 Physcomitrium patens
Pp3c15_22580 10.0kb downstream 10.0kb downstream 10000 false Chr15: 14630241-14640240 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336934 5274 Embryophyte View MSA
123373736 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain