Gene : Pp3c15_21310 P. patens v3.3
Defline:  (1 of 7) PTHR35133:SF1 - EFFECTOR OF TRANSCRIPTION2-RELATED Genomic Order:  957
Name:  ? Pp3c15_21310 Secondary Identifier:  ? PAC:32927732
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_21310 0.5kb upstream 0.5kb upstream 4593 true Chr15: 13851335-13855927 Physcomitrium patens
Pp3c15_21310 0.5kb upstream 0.5kb upstream 500 false Chr15: 13851335-13851834 Physcomitrium patens
Pp3c15_21310 0.5kb downstream 0.5kb downstream 4593 true Chr15: 13851835-13856427 Physcomitrium patens
Pp3c15_21310 0.5kb downstream 0.5kb downstream 500 false Chr15: 13855928-13856427 Physcomitrium patens
Pp3c15_21310 1.0kb upstream 1.0kb upstream 5093 true Chr15: 13850835-13855927 Physcomitrium patens
Pp3c15_21310 1.0kb upstream 1.0kb upstream 1000 false Chr15: 13850835-13851834 Physcomitrium patens
Pp3c15_21310 1.0kb downstream 1.0kb downstream 5093 true Chr15: 13851835-13856927 Physcomitrium patens
Pp3c15_21310 1.0kb downstream 1.0kb downstream 1000 false Chr15: 13855928-13856927 Physcomitrium patens
Pp3c15_21310 2.0kb upstream 2.0kb upstream 6093 true Chr15: 13849835-13855927 Physcomitrium patens
Pp3c15_21310 2.0kb upstream 2.0kb upstream 2000 false Chr15: 13849835-13851834 Physcomitrium patens
Pp3c15_21310 2.0kb downstream 2.0kb downstream 6093 true Chr15: 13851835-13857927 Physcomitrium patens
Pp3c15_21310 2.0kb downstream 2.0kb downstream 2000 false Chr15: 13855928-13857927 Physcomitrium patens
Pp3c15_21310 5.0kb upstream 5.0kb upstream 9093 true Chr15: 13846835-13855927 Physcomitrium patens
Pp3c15_21310 5.0kb upstream 5.0kb upstream 5000 false Chr15: 13846835-13851834 Physcomitrium patens
Pp3c15_21310 5.0kb downstream 5.0kb downstream 9093 true Chr15: 13851835-13860927 Physcomitrium patens
Pp3c15_21310 5.0kb downstream 5.0kb downstream 5000 false Chr15: 13855928-13860927 Physcomitrium patens
Pp3c15_21310 10.0kb upstream 10.0kb upstream 14093 true Chr15: 13841835-13855927 Physcomitrium patens
Pp3c15_21310 10.0kb upstream 10.0kb upstream 10000 false Chr15: 13841835-13851834 Physcomitrium patens
Pp3c15_21310 10.0kb downstream 10.0kb downstream 14093 true Chr15: 13851835-13865927 Physcomitrium patens
Pp3c15_21310 10.0kb downstream 10.0kb downstream 10000 false Chr15: 13855928-13865927 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347892 5274 Embryophyte View MSA
123380668 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.131        
cufflinks 11.429        
cufflinks 7.539        
cufflinks 17.747        
cufflinks 18.147        
cufflinks 13.14        
cufflinks 4.06        
cufflinks 0.099       Low
cufflinks 12.889        
cufflinks 8.515        
cufflinks 9.763        
cufflinks 21.505        
cufflinks 9.477        
cufflinks 3.186        
cufflinks 1.868       Low
cufflinks 4.103        
cufflinks 0.283       Low
cufflinks 12.38        
cufflinks 14.449        
cufflinks 11.409        
cufflinks 3.843        
cufflinks 8.019        
cufflinks 13.54        
cufflinks 10.395        
cufflinks 11.727        
cufflinks 7.273        
cufflinks 5.2        
cufflinks 7.173        
cufflinks 22.534     High High
cufflinks 11.194        

0 Strain