Gene : Pp3c15_25050 P. patens v3.3
Defline:  (1 of 1) PTHR10338:SF126 - MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC Genomic Order:  1154
Name:  ? Pp3c15_25050 Secondary Identifier:  ? PAC:32929407
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens CHLOROPHYLL-SYN Physcomitrium patens pathologic  
Ppatens PWY-7159 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_25050 0.5kb upstream 0.5kb upstream 3403 true Chr15: 16134985-16138387 Physcomitrium patens
Pp3c15_25050 0.5kb upstream 0.5kb upstream 500 false Chr15: 16137888-16138387 Physcomitrium patens
Pp3c15_25050 0.5kb downstream 0.5kb downstream 3403 true Chr15: 16134485-16137887 Physcomitrium patens
Pp3c15_25050 0.5kb downstream 0.5kb downstream 500 false Chr15: 16134485-16134984 Physcomitrium patens
Pp3c15_25050 1.0kb upstream 1.0kb upstream 3903 true Chr15: 16134985-16138887 Physcomitrium patens
Pp3c15_25050 1.0kb upstream 1.0kb upstream 1000 false Chr15: 16137888-16138887 Physcomitrium patens
Pp3c15_25050 1.0kb downstream 1.0kb downstream 3903 true Chr15: 16133985-16137887 Physcomitrium patens
Pp3c15_25050 1.0kb downstream 1.0kb downstream 1000 false Chr15: 16133985-16134984 Physcomitrium patens
Pp3c15_25050 2.0kb upstream 2.0kb upstream 4903 true Chr15: 16134985-16139887 Physcomitrium patens
Pp3c15_25050 2.0kb upstream 2.0kb upstream 2000 false Chr15: 16137888-16139887 Physcomitrium patens
Pp3c15_25050 2.0kb downstream 2.0kb downstream 4903 true Chr15: 16132985-16137887 Physcomitrium patens
Pp3c15_25050 2.0kb downstream 2.0kb downstream 2000 false Chr15: 16132985-16134984 Physcomitrium patens
Pp3c15_25050 5.0kb upstream 5.0kb upstream 7903 true Chr15: 16134985-16142887 Physcomitrium patens
Pp3c15_25050 5.0kb upstream 5.0kb upstream 5000 false Chr15: 16137888-16142887 Physcomitrium patens
Pp3c15_25050 5.0kb downstream 5.0kb downstream 7903 true Chr15: 16129985-16137887 Physcomitrium patens
Pp3c15_25050 5.0kb downstream 5.0kb downstream 5000 false Chr15: 16129985-16134984 Physcomitrium patens
Pp3c15_25050 10.0kb upstream 10.0kb upstream 12903 true Chr15: 16134985-16147887 Physcomitrium patens
Pp3c15_25050 10.0kb upstream 10.0kb upstream 10000 false Chr15: 16137888-16147887 Physcomitrium patens
Pp3c15_25050 10.0kb downstream 10.0kb downstream 12903 true Chr15: 16124985-16137887 Physcomitrium patens
Pp3c15_25050 10.0kb downstream 10.0kb downstream 10000 false Chr15: 16124985-16134984 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344824 5274 Embryophyte View MSA
123424530 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.026        
cufflinks 25.753     High High
cufflinks 5.619        
cufflinks 12.027        
cufflinks 0.378       Low
cufflinks 10.619        
cufflinks 14.257        
cufflinks 5.501        
cufflinks 8.377        
cufflinks 14.073        
cufflinks 9.211        
cufflinks 12.552        
cufflinks 17.121        
cufflinks 7.054        
cufflinks 2.352       Low
cufflinks 9.071        
cufflinks 12.63        
cufflinks 8.956        
cufflinks 13.747        
cufflinks 14.831        
cufflinks 9.363        
cufflinks 3.634        
cufflinks 11.947        
cufflinks 3.018        
cufflinks 0.309       Low
cufflinks 7.556        
cufflinks 6.454        
cufflinks 2.735        
cufflinks 10.364        
cufflinks 11.094        

0 Strain