Gene : Pp3c15_8820 P. patens v3.3
Defline:  (1 of 1) PTHR10906:SF2 - PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC Genomic Order:  443
Name:  ? Pp3c15_8820 Secondary Identifier:  ? PAC:32926836
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_8820 0.5kb upstream 0.5kb upstream 6152 true Chr15: 5722435-5728586 Physcomitrium patens
Pp3c15_8820 0.5kb upstream 0.5kb upstream 500 false Chr15: 5722435-5722934 Physcomitrium patens
Pp3c15_8820 0.5kb downstream 0.5kb downstream 6152 true Chr15: 5722935-5729086 Physcomitrium patens
Pp3c15_8820 0.5kb downstream 0.5kb downstream 500 false Chr15: 5728587-5729086 Physcomitrium patens
Pp3c15_8820 1.0kb upstream 1.0kb upstream 6652 true Chr15: 5721935-5728586 Physcomitrium patens
Pp3c15_8820 1.0kb upstream 1.0kb upstream 1000 false Chr15: 5721935-5722934 Physcomitrium patens
Pp3c15_8820 1.0kb downstream 1.0kb downstream 6652 true Chr15: 5722935-5729586 Physcomitrium patens
Pp3c15_8820 1.0kb downstream 1.0kb downstream 1000 false Chr15: 5728587-5729586 Physcomitrium patens
Pp3c15_8820 2.0kb upstream 2.0kb upstream 7652 true Chr15: 5720935-5728586 Physcomitrium patens
Pp3c15_8820 2.0kb upstream 2.0kb upstream 2000 false Chr15: 5720935-5722934 Physcomitrium patens
Pp3c15_8820 2.0kb downstream 2.0kb downstream 7652 true Chr15: 5722935-5730586 Physcomitrium patens
Pp3c15_8820 2.0kb downstream 2.0kb downstream 2000 false Chr15: 5728587-5730586 Physcomitrium patens
Pp3c15_8820 5.0kb upstream 5.0kb upstream 10652 true Chr15: 5717935-5728586 Physcomitrium patens
Pp3c15_8820 5.0kb upstream 5.0kb upstream 5000 false Chr15: 5717935-5722934 Physcomitrium patens
Pp3c15_8820 5.0kb downstream 5.0kb downstream 10652 true Chr15: 5722935-5733586 Physcomitrium patens
Pp3c15_8820 5.0kb downstream 5.0kb downstream 5000 false Chr15: 5728587-5733586 Physcomitrium patens
Pp3c15_8820 10.0kb upstream 10.0kb upstream 15652 true Chr15: 5712935-5728586 Physcomitrium patens
Pp3c15_8820 10.0kb upstream 10.0kb upstream 10000 false Chr15: 5712935-5722934 Physcomitrium patens
Pp3c15_8820 10.0kb downstream 10.0kb downstream 15652 true Chr15: 5722935-5738586 Physcomitrium patens
Pp3c15_8820 10.0kb downstream 10.0kb downstream 10000 false Chr15: 5728587-5738586 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345832 5274 Embryophyte View MSA
123425781 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 70.573     High  
cufflinks 59.7     High  
cufflinks 56.585     High  
cufflinks 89.16     High High
cufflinks 47.145     High  
cufflinks 43.175     High  
cufflinks 55.609     High  
cufflinks 35.485     High  
cufflinks 73.017     High High
cufflinks 48.952     High  
cufflinks 45.034     High  
cufflinks 80.728     High High
cufflinks 69.775     High  
cufflinks 28.005     High Low
cufflinks 46.349     High  
cufflinks 71.498     High  
cufflinks 42.642     High  
cufflinks 15.518       Low
cufflinks 56.721     High  
cufflinks 40.067     High  
cufflinks 55.68     High  
cufflinks 66.689     High  
cufflinks 70.988     High  
cufflinks 22.397     High Low
cufflinks 25.69     High Low
cufflinks 58.224     High  
cufflinks 51.431     High  
cufflinks 49.021     High  
cufflinks 17.371     High Low
cufflinks 43.504     High  

0 Strain