Gene : Pp3c15_6400 P. patens v3.3
Defline:  (1 of 25) PF06985 - Heterokaryon incompatibility protein (HET) (HET) Genomic Order:  331
Name:  ? Pp3c15_6400 Secondary Identifier:  ? PAC:32928086
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_6400 0.5kb upstream 0.5kb upstream 2616 true Chr15: 3929317-3931932 Physcomitrium patens
Pp3c15_6400 0.5kb upstream 0.5kb upstream 500 false Chr15: 3929317-3929816 Physcomitrium patens
Pp3c15_6400 0.5kb downstream 0.5kb downstream 2616 true Chr15: 3929817-3932432 Physcomitrium patens
Pp3c15_6400 0.5kb downstream 0.5kb downstream 500 false Chr15: 3931933-3932432 Physcomitrium patens
Pp3c15_6400 1.0kb upstream 1.0kb upstream 3116 true Chr15: 3928817-3931932 Physcomitrium patens
Pp3c15_6400 1.0kb upstream 1.0kb upstream 1000 false Chr15: 3928817-3929816 Physcomitrium patens
Pp3c15_6400 1.0kb downstream 1.0kb downstream 3116 true Chr15: 3929817-3932932 Physcomitrium patens
Pp3c15_6400 1.0kb downstream 1.0kb downstream 1000 false Chr15: 3931933-3932932 Physcomitrium patens
Pp3c15_6400 2.0kb upstream 2.0kb upstream 4116 true Chr15: 3927817-3931932 Physcomitrium patens
Pp3c15_6400 2.0kb upstream 2.0kb upstream 2000 false Chr15: 3927817-3929816 Physcomitrium patens
Pp3c15_6400 2.0kb downstream 2.0kb downstream 4116 true Chr15: 3929817-3933932 Physcomitrium patens
Pp3c15_6400 2.0kb downstream 2.0kb downstream 2000 false Chr15: 3931933-3933932 Physcomitrium patens
Pp3c15_6400 5.0kb upstream 5.0kb upstream 7116 true Chr15: 3924817-3931932 Physcomitrium patens
Pp3c15_6400 5.0kb upstream 5.0kb upstream 5000 false Chr15: 3924817-3929816 Physcomitrium patens
Pp3c15_6400 5.0kb downstream 5.0kb downstream 7116 true Chr15: 3929817-3936932 Physcomitrium patens
Pp3c15_6400 5.0kb downstream 5.0kb downstream 5000 false Chr15: 3931933-3936932 Physcomitrium patens
Pp3c15_6400 10.0kb upstream 10.0kb upstream 12116 true Chr15: 3919817-3931932 Physcomitrium patens
Pp3c15_6400 10.0kb upstream 10.0kb upstream 10000 false Chr15: 3919817-3929816 Physcomitrium patens
Pp3c15_6400 10.0kb downstream 10.0kb downstream 12116 true Chr15: 3929817-3941932 Physcomitrium patens
Pp3c15_6400 10.0kb downstream 10.0kb downstream 10000 false Chr15: 3931933-3941932 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121328633 5274 Embryophyte Singleton cluster - no MSA
123365636 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.002     Low Low
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.005     Low  
cufflinks 0.006     Low  
cufflinks 0.002     Low Low
cufflinks 0.014     Low  
cufflinks 0.002     Low Low
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.005     Low  
cufflinks 0.003     Low  
cufflinks 0.022     Low High
cufflinks 0.017     Low High
cufflinks 0.018     Low High
cufflinks 0.013     Low  
cufflinks 0.021     Low High
cufflinks 0.005     Low  
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed

0 Strain