Gene : Pp3c16_16260 P. patens v3.3
Defline:  (1 of 39) PF00612 - IQ calmodulin-binding motif (IQ) Genomic Order:  845
Name:  ? Pp3c16_16260 Secondary Identifier:  ? PAC:32986500
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_16260 0.5kb upstream 0.5kb upstream 8143 true Chr16: 10098134-10106276 Physcomitrium patens
Pp3c16_16260 0.5kb upstream 0.5kb upstream 500 false Chr16: 10105777-10106276 Physcomitrium patens
Pp3c16_16260 0.5kb downstream 0.5kb downstream 8143 true Chr16: 10097634-10105776 Physcomitrium patens
Pp3c16_16260 0.5kb downstream 0.5kb downstream 500 false Chr16: 10097634-10098133 Physcomitrium patens
Pp3c16_16260 1.0kb upstream 1.0kb upstream 8643 true Chr16: 10098134-10106776 Physcomitrium patens
Pp3c16_16260 1.0kb upstream 1.0kb upstream 1000 false Chr16: 10105777-10106776 Physcomitrium patens
Pp3c16_16260 1.0kb downstream 1.0kb downstream 8643 true Chr16: 10097134-10105776 Physcomitrium patens
Pp3c16_16260 1.0kb downstream 1.0kb downstream 1000 false Chr16: 10097134-10098133 Physcomitrium patens
Pp3c16_16260 2.0kb upstream 2.0kb upstream 9643 true Chr16: 10098134-10107776 Physcomitrium patens
Pp3c16_16260 2.0kb upstream 2.0kb upstream 2000 false Chr16: 10105777-10107776 Physcomitrium patens
Pp3c16_16260 2.0kb downstream 2.0kb downstream 9643 true Chr16: 10096134-10105776 Physcomitrium patens
Pp3c16_16260 2.0kb downstream 2.0kb downstream 2000 false Chr16: 10096134-10098133 Physcomitrium patens
Pp3c16_16260 5.0kb upstream 5.0kb upstream 12643 true Chr16: 10098134-10110776 Physcomitrium patens
Pp3c16_16260 5.0kb upstream 5.0kb upstream 5000 false Chr16: 10105777-10110776 Physcomitrium patens
Pp3c16_16260 5.0kb downstream 5.0kb downstream 12643 true Chr16: 10093134-10105776 Physcomitrium patens
Pp3c16_16260 5.0kb downstream 5.0kb downstream 5000 false Chr16: 10093134-10098133 Physcomitrium patens
Pp3c16_16260 10.0kb upstream 10.0kb upstream 17643 true Chr16: 10098134-10115776 Physcomitrium patens
Pp3c16_16260 10.0kb upstream 10.0kb upstream 10000 false Chr16: 10105777-10115776 Physcomitrium patens
Pp3c16_16260 10.0kb downstream 10.0kb downstream 17643 true Chr16: 10088134-10105776 Physcomitrium patens
Pp3c16_16260 10.0kb downstream 10.0kb downstream 10000 false Chr16: 10088134-10098133 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342379 5274 Embryophyte View MSA
123378957 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.188        
cufflinks 0.633        
cufflinks 0.486        
cufflinks 0.309        
cufflinks 0.437        
cufflinks 0.394        
cufflinks 0.767        
cufflinks 0.509        
cufflinks 1.303       High
cufflinks 0.087       Low
cufflinks 0.086       Low
cufflinks 0.03     Low Low
cufflinks 0.863        
cufflinks 0.58        
cufflinks 0.231        
cufflinks 0.18        
cufflinks 0.655        
cufflinks 0.482        
cufflinks 0.293        
cufflinks 0.08       Low
cufflinks 0.483        
cufflinks 0.442        
cufflinks 0.037     Low Low
cufflinks 0.177        
cufflinks 1.138       High
cufflinks 0.325        
cufflinks 0.651        
cufflinks 1.058       High
cufflinks 0.33        
cufflinks 0.725        

0 Strain