Gene : Pp3c16_16610 P. patens v3.3
Defline:  (1 of 1) PTHR16007//PTHR16007:SF9 - EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED Genomic Order:  867
Name:  ? Pp3c16_16610 Secondary Identifier:  ? PAC:32984510
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_16610 0.5kb upstream 0.5kb upstream 2713 true Chr16: 10239731-10242443 Physcomitrium patens
Pp3c16_16610 0.5kb upstream 0.5kb upstream 500 false Chr16: 10239731-10240230 Physcomitrium patens
Pp3c16_16610 0.5kb downstream 0.5kb downstream 2713 true Chr16: 10240231-10242943 Physcomitrium patens
Pp3c16_16610 0.5kb downstream 0.5kb downstream 500 false Chr16: 10242444-10242943 Physcomitrium patens
Pp3c16_16610 1.0kb upstream 1.0kb upstream 3213 true Chr16: 10239231-10242443 Physcomitrium patens
Pp3c16_16610 1.0kb upstream 1.0kb upstream 1000 false Chr16: 10239231-10240230 Physcomitrium patens
Pp3c16_16610 1.0kb downstream 1.0kb downstream 3213 true Chr16: 10240231-10243443 Physcomitrium patens
Pp3c16_16610 1.0kb downstream 1.0kb downstream 1000 false Chr16: 10242444-10243443 Physcomitrium patens
Pp3c16_16610 2.0kb upstream 2.0kb upstream 4213 true Chr16: 10238231-10242443 Physcomitrium patens
Pp3c16_16610 2.0kb upstream 2.0kb upstream 2000 false Chr16: 10238231-10240230 Physcomitrium patens
Pp3c16_16610 2.0kb downstream 2.0kb downstream 4213 true Chr16: 10240231-10244443 Physcomitrium patens
Pp3c16_16610 2.0kb downstream 2.0kb downstream 2000 false Chr16: 10242444-10244443 Physcomitrium patens
Pp3c16_16610 5.0kb upstream 5.0kb upstream 7213 true Chr16: 10235231-10242443 Physcomitrium patens
Pp3c16_16610 5.0kb upstream 5.0kb upstream 5000 false Chr16: 10235231-10240230 Physcomitrium patens
Pp3c16_16610 5.0kb downstream 5.0kb downstream 7213 true Chr16: 10240231-10247443 Physcomitrium patens
Pp3c16_16610 5.0kb downstream 5.0kb downstream 5000 false Chr16: 10242444-10247443 Physcomitrium patens
Pp3c16_16610 10.0kb upstream 10.0kb upstream 12213 true Chr16: 10230231-10242443 Physcomitrium patens
Pp3c16_16610 10.0kb upstream 10.0kb upstream 10000 false Chr16: 10230231-10240230 Physcomitrium patens
Pp3c16_16610 10.0kb downstream 10.0kb downstream 12213 true Chr16: 10240231-10252443 Physcomitrium patens
Pp3c16_16610 10.0kb downstream 10.0kb downstream 10000 false Chr16: 10242444-10252443 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350750 5274 Embryophyte View MSA
123381874 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.613        
cufflinks 0.442       Low
cufflinks 0.824        
cufflinks 1.119       High
cufflinks 0.895        
cufflinks 0.518        
cufflinks 0.752        
cufflinks 0.174       Low
cufflinks 0.826        
cufflinks 0.862        
cufflinks 0.369       Low
cufflinks 0.929        
cufflinks 0.94        
cufflinks 0.675        
cufflinks 1.002        
cufflinks 0.929        
cufflinks 0.178       Low
cufflinks 0.719        
cufflinks 0.866        
cufflinks 1.022        
cufflinks 0.912        
cufflinks 1.037        
cufflinks 0.759        
cufflinks 0.809        
cufflinks 0.583        
cufflinks 0.547        
cufflinks 0.683        
cufflinks 0.737        
cufflinks 0.893        
cufflinks 1.128       High

0 Strain