Gene : Pp3c16_17130 P. patens v3.3
Defline:  (1 of 1) KOG1679 - Enoyl-CoA hydratase Genomic Order:  903
Name:  ? Pp3c16_17130 Secondary Identifier:  ? PAC:32985532
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens LEU-DEG2-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_17130 0.5kb upstream 0.5kb upstream 5359 true Chr16: 10482536-10487894 Physcomitrium patens
Pp3c16_17130 0.5kb upstream 0.5kb upstream 500 false Chr16: 10482536-10483035 Physcomitrium patens
Pp3c16_17130 0.5kb downstream 0.5kb downstream 5359 true Chr16: 10483036-10488394 Physcomitrium patens
Pp3c16_17130 0.5kb downstream 0.5kb downstream 500 false Chr16: 10487895-10488394 Physcomitrium patens
Pp3c16_17130 1.0kb upstream 1.0kb upstream 5859 true Chr16: 10482036-10487894 Physcomitrium patens
Pp3c16_17130 1.0kb upstream 1.0kb upstream 1000 false Chr16: 10482036-10483035 Physcomitrium patens
Pp3c16_17130 1.0kb downstream 1.0kb downstream 5859 true Chr16: 10483036-10488894 Physcomitrium patens
Pp3c16_17130 1.0kb downstream 1.0kb downstream 1000 false Chr16: 10487895-10488894 Physcomitrium patens
Pp3c16_17130 2.0kb upstream 2.0kb upstream 6859 true Chr16: 10481036-10487894 Physcomitrium patens
Pp3c16_17130 2.0kb upstream 2.0kb upstream 2000 false Chr16: 10481036-10483035 Physcomitrium patens
Pp3c16_17130 2.0kb downstream 2.0kb downstream 6859 true Chr16: 10483036-10489894 Physcomitrium patens
Pp3c16_17130 2.0kb downstream 2.0kb downstream 2000 false Chr16: 10487895-10489894 Physcomitrium patens
Pp3c16_17130 5.0kb upstream 5.0kb upstream 9859 true Chr16: 10478036-10487894 Physcomitrium patens
Pp3c16_17130 5.0kb upstream 5.0kb upstream 5000 false Chr16: 10478036-10483035 Physcomitrium patens
Pp3c16_17130 5.0kb downstream 5.0kb downstream 9859 true Chr16: 10483036-10492894 Physcomitrium patens
Pp3c16_17130 5.0kb downstream 5.0kb downstream 5000 false Chr16: 10487895-10492894 Physcomitrium patens
Pp3c16_17130 10.0kb upstream 10.0kb upstream 14859 true Chr16: 10473036-10487894 Physcomitrium patens
Pp3c16_17130 10.0kb upstream 10.0kb upstream 10000 false Chr16: 10473036-10483035 Physcomitrium patens
Pp3c16_17130 10.0kb downstream 10.0kb downstream 14859 true Chr16: 10483036-10497894 Physcomitrium patens
Pp3c16_17130 10.0kb downstream 10.0kb downstream 10000 false Chr16: 10487895-10497894 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351751 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.204       Low
cufflinks 0.552       High
cufflinks 0.397        
cufflinks 0.23       Low
cufflinks 0.288        
cufflinks 0.249       Low
cufflinks 0.276        
cufflinks 0.485        
cufflinks 0.477        
cufflinks 0.3        
cufflinks 0.502        
cufflinks 0.347        
cufflinks 0.437        
cufflinks 0.328        
cufflinks 0.482        
cufflinks 0.292        
cufflinks 0.686       High
cufflinks 0.351        
cufflinks 0.238       Low
cufflinks 0.497        
cufflinks 0.234       Low
cufflinks 0.345        
cufflinks 0.431        
cufflinks 0.627       High
cufflinks 0.202       Low
cufflinks 0.248       Low
cufflinks 0.39        
cufflinks 0.364        
cufflinks 0.917       High
cufflinks 0.674       High

0 Strain