Gene : Pp3c16_17520 P. patens v3.3
Defline:  (1 of 1) PTHR10133:SF22 - 5'-3' EXONUCLEASE FAMILY PROTEIN Genomic Order:  921
Name:  ? Pp3c16_17520 Secondary Identifier:  ? PAC:32985678
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_17520 0.5kb upstream 0.5kb upstream 3420 true Chr16: 10740997-10744416 Physcomitrium patens
Pp3c16_17520 0.5kb upstream 0.5kb upstream 500 false Chr16: 10743917-10744416 Physcomitrium patens
Pp3c16_17520 0.5kb downstream 0.5kb downstream 3420 true Chr16: 10740497-10743916 Physcomitrium patens
Pp3c16_17520 0.5kb downstream 0.5kb downstream 500 false Chr16: 10740497-10740996 Physcomitrium patens
Pp3c16_17520 1.0kb upstream 1.0kb upstream 3920 true Chr16: 10740997-10744916 Physcomitrium patens
Pp3c16_17520 1.0kb upstream 1.0kb upstream 1000 false Chr16: 10743917-10744916 Physcomitrium patens
Pp3c16_17520 1.0kb downstream 1.0kb downstream 3920 true Chr16: 10739997-10743916 Physcomitrium patens
Pp3c16_17520 1.0kb downstream 1.0kb downstream 1000 false Chr16: 10739997-10740996 Physcomitrium patens
Pp3c16_17520 2.0kb upstream 2.0kb upstream 4920 true Chr16: 10740997-10745916 Physcomitrium patens
Pp3c16_17520 2.0kb upstream 2.0kb upstream 2000 false Chr16: 10743917-10745916 Physcomitrium patens
Pp3c16_17520 2.0kb downstream 2.0kb downstream 4920 true Chr16: 10738997-10743916 Physcomitrium patens
Pp3c16_17520 2.0kb downstream 2.0kb downstream 2000 false Chr16: 10738997-10740996 Physcomitrium patens
Pp3c16_17520 5.0kb upstream 5.0kb upstream 7920 true Chr16: 10740997-10748916 Physcomitrium patens
Pp3c16_17520 5.0kb upstream 5.0kb upstream 5000 false Chr16: 10743917-10748916 Physcomitrium patens
Pp3c16_17520 5.0kb downstream 5.0kb downstream 7920 true Chr16: 10735997-10743916 Physcomitrium patens
Pp3c16_17520 5.0kb downstream 5.0kb downstream 5000 false Chr16: 10735997-10740996 Physcomitrium patens
Pp3c16_17520 10.0kb upstream 10.0kb upstream 12920 true Chr16: 10740997-10753916 Physcomitrium patens
Pp3c16_17520 10.0kb upstream 10.0kb upstream 10000 false Chr16: 10743917-10753916 Physcomitrium patens
Pp3c16_17520 10.0kb downstream 10.0kb downstream 12920 true Chr16: 10730997-10743916 Physcomitrium patens
Pp3c16_17520 10.0kb downstream 10.0kb downstream 10000 false Chr16: 10730997-10740996 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346899 5274 Embryophyte View MSA
123425715 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.232        
cufflinks 1.529        
cufflinks 1.93       High
cufflinks 1.674        
cufflinks 2.466       High
cufflinks 1.938       High
cufflinks 1.282        
cufflinks 2.462       High
cufflinks 0.713       Low
cufflinks 0.91       Low
cufflinks 0.694       Low
cufflinks 1.356        
cufflinks 1.259        
cufflinks 0.725       Low
cufflinks 1.704        
cufflinks 0.87       Low
cufflinks 1.405        
cufflinks 1.7        
cufflinks 0.694       Low
cufflinks 1.659        
cufflinks 2.202       High
cufflinks 1.084        
cufflinks 1.689        
cufflinks 1.252        
cufflinks 1.259        
cufflinks 1.063        
cufflinks 1.598        
cufflinks 1.876        
cufflinks 1.353        
cufflinks 1.022        

0 Strain