Gene : Pp3c16_6180 P. patens v3.3
Defline:  (1 of 1) PTHR21493:SF119 - TRIGLYCERIDE LIPASE-RELATED Genomic Order:  310
Name:  ? Pp3c16_6180 Secondary Identifier:  ? PAC:32984402
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_6180 0.5kb upstream 0.5kb upstream 7872 true Chr16: 4028077-4035948 Physcomitrium patens
Pp3c16_6180 0.5kb upstream 0.5kb upstream 500 false Chr16: 4035449-4035948 Physcomitrium patens
Pp3c16_6180 0.5kb downstream 0.5kb downstream 7872 true Chr16: 4027577-4035448 Physcomitrium patens
Pp3c16_6180 0.5kb downstream 0.5kb downstream 500 false Chr16: 4027577-4028076 Physcomitrium patens
Pp3c16_6180 1.0kb upstream 1.0kb upstream 8372 true Chr16: 4028077-4036448 Physcomitrium patens
Pp3c16_6180 1.0kb upstream 1.0kb upstream 1000 false Chr16: 4035449-4036448 Physcomitrium patens
Pp3c16_6180 1.0kb downstream 1.0kb downstream 8372 true Chr16: 4027077-4035448 Physcomitrium patens
Pp3c16_6180 1.0kb downstream 1.0kb downstream 1000 false Chr16: 4027077-4028076 Physcomitrium patens
Pp3c16_6180 2.0kb upstream 2.0kb upstream 9372 true Chr16: 4028077-4037448 Physcomitrium patens
Pp3c16_6180 2.0kb upstream 2.0kb upstream 2000 false Chr16: 4035449-4037448 Physcomitrium patens
Pp3c16_6180 2.0kb downstream 2.0kb downstream 9372 true Chr16: 4026077-4035448 Physcomitrium patens
Pp3c16_6180 2.0kb downstream 2.0kb downstream 2000 false Chr16: 4026077-4028076 Physcomitrium patens
Pp3c16_6180 5.0kb upstream 5.0kb upstream 12372 true Chr16: 4028077-4040448 Physcomitrium patens
Pp3c16_6180 5.0kb upstream 5.0kb upstream 5000 false Chr16: 4035449-4040448 Physcomitrium patens
Pp3c16_6180 5.0kb downstream 5.0kb downstream 12372 true Chr16: 4023077-4035448 Physcomitrium patens
Pp3c16_6180 5.0kb downstream 5.0kb downstream 5000 false Chr16: 4023077-4028076 Physcomitrium patens
Pp3c16_6180 10.0kb upstream 10.0kb upstream 17372 true Chr16: 4028077-4045448 Physcomitrium patens
Pp3c16_6180 10.0kb upstream 10.0kb upstream 10000 false Chr16: 4035449-4045448 Physcomitrium patens
Pp3c16_6180 10.0kb downstream 10.0kb downstream 17372 true Chr16: 4018077-4035448 Physcomitrium patens
Pp3c16_6180 10.0kb downstream 10.0kb downstream 10000 false Chr16: 4018077-4028076 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350086 5274 Embryophyte View MSA
123428676 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.473        
cufflinks 15.206        
cufflinks 12.637        
cufflinks 25.562     High High
cufflinks 10.497        
cufflinks 17.677        
cufflinks 1.902       Low
cufflinks 16.746        
cufflinks 5.213       Low
cufflinks 11.29        
cufflinks 4.935       Low
cufflinks 9.169        
cufflinks 26.326     High High
cufflinks 10.002        
cufflinks 14.234        
cufflinks 23.469     High  
cufflinks 34.499     High High
cufflinks 18.775        
cufflinks 32.368     High High
cufflinks 12.245        
cufflinks 14.086        
cufflinks 10.705        
cufflinks 4.518       Low
cufflinks 1.854       Low
cufflinks 8.56        
cufflinks 21.026        
cufflinks 14.791        
cufflinks 10.762        
cufflinks 19.326        
cufflinks 19.665        

0 Strain