Gene : Pp3c16_9880 P. patens v3.3
Defline:  (1 of 24) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  505
Name:  ? Pp3c16_9880 Secondary Identifier:  ? PAC:32984640
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_9880 0.5kb upstream 0.5kb upstream 3874 true Chr16: 6129043-6132916 Physcomitrium patens
Pp3c16_9880 0.5kb upstream 0.5kb upstream 500 false Chr16: 6129043-6129542 Physcomitrium patens
Pp3c16_9880 0.5kb downstream 0.5kb downstream 3874 true Chr16: 6129543-6133416 Physcomitrium patens
Pp3c16_9880 0.5kb downstream 0.5kb downstream 500 false Chr16: 6132917-6133416 Physcomitrium patens
Pp3c16_9880 1.0kb upstream 1.0kb upstream 4374 true Chr16: 6128543-6132916 Physcomitrium patens
Pp3c16_9880 1.0kb upstream 1.0kb upstream 1000 false Chr16: 6128543-6129542 Physcomitrium patens
Pp3c16_9880 1.0kb downstream 1.0kb downstream 4374 true Chr16: 6129543-6133916 Physcomitrium patens
Pp3c16_9880 1.0kb downstream 1.0kb downstream 1000 false Chr16: 6132917-6133916 Physcomitrium patens
Pp3c16_9880 2.0kb upstream 2.0kb upstream 5374 true Chr16: 6127543-6132916 Physcomitrium patens
Pp3c16_9880 2.0kb upstream 2.0kb upstream 2000 false Chr16: 6127543-6129542 Physcomitrium patens
Pp3c16_9880 2.0kb downstream 2.0kb downstream 5374 true Chr16: 6129543-6134916 Physcomitrium patens
Pp3c16_9880 2.0kb downstream 2.0kb downstream 2000 false Chr16: 6132917-6134916 Physcomitrium patens
Pp3c16_9880 5.0kb upstream 5.0kb upstream 8374 true Chr16: 6124543-6132916 Physcomitrium patens
Pp3c16_9880 5.0kb upstream 5.0kb upstream 5000 false Chr16: 6124543-6129542 Physcomitrium patens
Pp3c16_9880 5.0kb downstream 5.0kb downstream 8374 true Chr16: 6129543-6137916 Physcomitrium patens
Pp3c16_9880 5.0kb downstream 5.0kb downstream 5000 false Chr16: 6132917-6137916 Physcomitrium patens
Pp3c16_9880 10.0kb upstream 10.0kb upstream 13374 true Chr16: 6119543-6132916 Physcomitrium patens
Pp3c16_9880 10.0kb upstream 10.0kb upstream 10000 false Chr16: 6119543-6129542 Physcomitrium patens
Pp3c16_9880 10.0kb downstream 10.0kb downstream 13374 true Chr16: 6129543-6142916 Physcomitrium patens
Pp3c16_9880 10.0kb downstream 10.0kb downstream 10000 false Chr16: 6132917-6142916 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347538 5274 Embryophyte View MSA
123380566 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.669        
cufflinks 1.578       Low
cufflinks 1.845        
cufflinks 2.877        
cufflinks 2.522        
cufflinks 10.336       High
cufflinks 2.832        
cufflinks 3.325        
cufflinks 3.735        
cufflinks 1.27       Low
cufflinks 1.884        
cufflinks 1.737        
cufflinks 1.233       Low
cufflinks 2.965        
cufflinks 2.939        
cufflinks 2.646        
cufflinks 2.164        
cufflinks 2.478        
cufflinks 2.449        
cufflinks 2.427        
cufflinks 4.834       High
cufflinks 1.899        
cufflinks 10.911       High
cufflinks 3.325        
cufflinks 2.341        
cufflinks 2.743        
cufflinks 1.816        
cufflinks 4.222        
cufflinks 2.668        
cufflinks 2.118        

0 Strain