Gene : Pp3c16_9310 P. patens v3.3
Defline:  (1 of 2) PTHR31339:SF10 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN Genomic Order:  486
Name:  ? Pp3c16_9310 Secondary Identifier:  ? PAC:32984199
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_9310 0.5kb upstream 0.5kb upstream 3027 true Chr16: 5698272-5701298 Physcomitrium patens
Pp3c16_9310 0.5kb upstream 0.5kb upstream 500 false Chr16: 5700799-5701298 Physcomitrium patens
Pp3c16_9310 0.5kb downstream 0.5kb downstream 3027 true Chr16: 5697772-5700798 Physcomitrium patens
Pp3c16_9310 0.5kb downstream 0.5kb downstream 500 false Chr16: 5697772-5698271 Physcomitrium patens
Pp3c16_9310 1.0kb upstream 1.0kb upstream 3527 true Chr16: 5698272-5701798 Physcomitrium patens
Pp3c16_9310 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5700799-5701798 Physcomitrium patens
Pp3c16_9310 1.0kb downstream 1.0kb downstream 3527 true Chr16: 5697272-5700798 Physcomitrium patens
Pp3c16_9310 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5697272-5698271 Physcomitrium patens
Pp3c16_9310 2.0kb upstream 2.0kb upstream 4527 true Chr16: 5698272-5702798 Physcomitrium patens
Pp3c16_9310 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5700799-5702798 Physcomitrium patens
Pp3c16_9310 2.0kb downstream 2.0kb downstream 4527 true Chr16: 5696272-5700798 Physcomitrium patens
Pp3c16_9310 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5696272-5698271 Physcomitrium patens
Pp3c16_9310 5.0kb upstream 5.0kb upstream 7527 true Chr16: 5698272-5705798 Physcomitrium patens
Pp3c16_9310 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5700799-5705798 Physcomitrium patens
Pp3c16_9310 5.0kb downstream 5.0kb downstream 7527 true Chr16: 5693272-5700798 Physcomitrium patens
Pp3c16_9310 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5693272-5698271 Physcomitrium patens
Pp3c16_9310 10.0kb upstream 10.0kb upstream 12527 true Chr16: 5698272-5710798 Physcomitrium patens
Pp3c16_9310 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5700799-5710798 Physcomitrium patens
Pp3c16_9310 10.0kb downstream 10.0kb downstream 12527 true Chr16: 5688272-5700798 Physcomitrium patens
Pp3c16_9310 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5688272-5698271 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343864 5274 Embryophyte View MSA
123425677 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.278        
cufflinks 0.532       Low
cufflinks 1.828        
cufflinks 1.889        
cufflinks 1.355        
cufflinks 1.701        
cufflinks 0.174       Low
cufflinks 1.022        
cufflinks 1.067        
cufflinks 0.742        
cufflinks 1.611        
cufflinks 1.725        
cufflinks 1.273        
cufflinks 1.296        
cufflinks 1.465        
cufflinks 0.278       Low
cufflinks 0.868        
cufflinks 1.391        
cufflinks 1.642        
cufflinks 1.222        
cufflinks 2.15       High
cufflinks 1.556        
cufflinks 1.288        
cufflinks 1.665        
cufflinks 1.322        
cufflinks 0.945        
cufflinks 1.402        
cufflinks 1.423        
cufflinks 0.889        
cufflinks 3.064       High

0 Strain