Gene : Pp3c16_8580 P. patens v3.3
Defline:  (1 of 1) PTHR13673 - ESOPHAGEAL CANCER ASSOCIATED PROTEIN Genomic Order:  445
Name:  ? Pp3c16_8580 Secondary Identifier:  ? PAC:32984757
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_8580 0.5kb upstream 0.5kb upstream 8348 true Chr16: 5275351-5283698 Physcomitrium patens
Pp3c16_8580 0.5kb upstream 0.5kb upstream 500 false Chr16: 5283199-5283698 Physcomitrium patens
Pp3c16_8580 0.5kb downstream 0.5kb downstream 8348 true Chr16: 5274851-5283198 Physcomitrium patens
Pp3c16_8580 0.5kb downstream 0.5kb downstream 500 false Chr16: 5274851-5275350 Physcomitrium patens
Pp3c16_8580 1.0kb upstream 1.0kb upstream 8848 true Chr16: 5275351-5284198 Physcomitrium patens
Pp3c16_8580 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5283199-5284198 Physcomitrium patens
Pp3c16_8580 1.0kb downstream 1.0kb downstream 8848 true Chr16: 5274351-5283198 Physcomitrium patens
Pp3c16_8580 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5274351-5275350 Physcomitrium patens
Pp3c16_8580 2.0kb upstream 2.0kb upstream 9848 true Chr16: 5275351-5285198 Physcomitrium patens
Pp3c16_8580 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5283199-5285198 Physcomitrium patens
Pp3c16_8580 2.0kb downstream 2.0kb downstream 9848 true Chr16: 5273351-5283198 Physcomitrium patens
Pp3c16_8580 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5273351-5275350 Physcomitrium patens
Pp3c16_8580 5.0kb upstream 5.0kb upstream 12848 true Chr16: 5275351-5288198 Physcomitrium patens
Pp3c16_8580 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5283199-5288198 Physcomitrium patens
Pp3c16_8580 5.0kb downstream 5.0kb downstream 12848 true Chr16: 5270351-5283198 Physcomitrium patens
Pp3c16_8580 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5270351-5275350 Physcomitrium patens
Pp3c16_8580 10.0kb upstream 10.0kb upstream 17848 true Chr16: 5275351-5293198 Physcomitrium patens
Pp3c16_8580 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5283199-5293198 Physcomitrium patens
Pp3c16_8580 10.0kb downstream 10.0kb downstream 17848 true Chr16: 5265351-5283198 Physcomitrium patens
Pp3c16_8580 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5265351-5275350 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348229 5274 Embryophyte View MSA
123380782 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.992        
cufflinks 12.074        
cufflinks 15.689        
cufflinks 6.822       Low
cufflinks 10.845        
cufflinks 15.653        
cufflinks 14.083        
cufflinks 16.19       High
cufflinks 8.843       Low
cufflinks 12.5        
cufflinks 15.957       High
cufflinks 10.243        
cufflinks 17.676       High
cufflinks 9.729        
cufflinks 15.068        
cufflinks 9.63        
cufflinks 13.31        
cufflinks 14.244        
cufflinks 6.342       Low
cufflinks 17.705       High
cufflinks 15.701        
cufflinks 13.485        
cufflinks 9.439        
cufflinks 10.697        
cufflinks 11.613        
cufflinks 16.37       High
cufflinks 13.326        
cufflinks 15.155        
cufflinks 9.775        
cufflinks 14.729        

0 Strain