Gene : Pp3c16_4000 P. patens v3.3
Defline:  (1 of 1) KOG4262 - Uncharacterized conserved protein Genomic Order:  208
Name:  ? Pp3c16_4000 Secondary Identifier:  ? PAC:32984077
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_4000 0.5kb upstream 0.5kb upstream 8150 true Chr16: 2582134-2590283 Physcomitrium patens
Pp3c16_4000 0.5kb upstream 0.5kb upstream 500 false Chr16: 2582134-2582633 Physcomitrium patens
Pp3c16_4000 0.5kb downstream 0.5kb downstream 8150 true Chr16: 2582634-2590783 Physcomitrium patens
Pp3c16_4000 0.5kb downstream 0.5kb downstream 500 false Chr16: 2590284-2590783 Physcomitrium patens
Pp3c16_4000 1.0kb upstream 1.0kb upstream 8650 true Chr16: 2581634-2590283 Physcomitrium patens
Pp3c16_4000 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2581634-2582633 Physcomitrium patens
Pp3c16_4000 1.0kb downstream 1.0kb downstream 8650 true Chr16: 2582634-2591283 Physcomitrium patens
Pp3c16_4000 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2590284-2591283 Physcomitrium patens
Pp3c16_4000 2.0kb upstream 2.0kb upstream 9650 true Chr16: 2580634-2590283 Physcomitrium patens
Pp3c16_4000 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2580634-2582633 Physcomitrium patens
Pp3c16_4000 2.0kb downstream 2.0kb downstream 9650 true Chr16: 2582634-2592283 Physcomitrium patens
Pp3c16_4000 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2590284-2592283 Physcomitrium patens
Pp3c16_4000 5.0kb upstream 5.0kb upstream 12650 true Chr16: 2577634-2590283 Physcomitrium patens
Pp3c16_4000 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2577634-2582633 Physcomitrium patens
Pp3c16_4000 5.0kb downstream 5.0kb downstream 12650 true Chr16: 2582634-2595283 Physcomitrium patens
Pp3c16_4000 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2590284-2595283 Physcomitrium patens
Pp3c16_4000 10.0kb upstream 10.0kb upstream 17650 true Chr16: 2572634-2590283 Physcomitrium patens
Pp3c16_4000 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2572634-2582633 Physcomitrium patens
Pp3c16_4000 10.0kb downstream 10.0kb downstream 17650 true Chr16: 2582634-2600283 Physcomitrium patens
Pp3c16_4000 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2590284-2600283 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349717 5274 Embryophyte View MSA
123381413 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.563     High  
cufflinks 33.619     High  
cufflinks 23.371     High  
cufflinks 24.71     High  
cufflinks 21.632        
cufflinks 21.247     High  
cufflinks 22.626     High  
cufflinks 22.864     High  
cufflinks 25.359     High  
cufflinks 19.004     High Low
cufflinks 31.755     High  
cufflinks 28.234     High  
cufflinks 19.907     High Low
cufflinks 37.747     High High
cufflinks 22.542     High  
cufflinks 24.162     High  
cufflinks 38.277     High High
cufflinks 28.574     High  
cufflinks 30.957     High  
cufflinks 20.858       Low
cufflinks 33.722     High High
cufflinks 19.233       Low
cufflinks 35.157     High High
cufflinks 23.987     High  
cufflinks 44.074     High High
cufflinks 29.707     High  
cufflinks 29.909     High  
cufflinks 32.982     High  
cufflinks 32.821     High  
cufflinks 16.17       Low

0 Strain