Gene : Pp3c16_5660 P. patens v3.3
Defline:  (1 of 1) PTHR33514:SF3 - PROTEIN ABCI12, CHLOROPLASTIC Genomic Order:  280
Name:  ? Pp3c16_5660 Secondary Identifier:  ? PAC:32985162
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_5660 0.5kb upstream 0.5kb upstream 6034 true Chr16: 3732907-3738940 Physcomitrium patens
Pp3c16_5660 0.5kb upstream 0.5kb upstream 500 false Chr16: 3738441-3738940 Physcomitrium patens
Pp3c16_5660 0.5kb downstream 0.5kb downstream 6034 true Chr16: 3732407-3738440 Physcomitrium patens
Pp3c16_5660 0.5kb downstream 0.5kb downstream 500 false Chr16: 3732407-3732906 Physcomitrium patens
Pp3c16_5660 1.0kb upstream 1.0kb upstream 6534 true Chr16: 3732907-3739440 Physcomitrium patens
Pp3c16_5660 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3738441-3739440 Physcomitrium patens
Pp3c16_5660 1.0kb downstream 1.0kb downstream 6534 true Chr16: 3731907-3738440 Physcomitrium patens
Pp3c16_5660 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3731907-3732906 Physcomitrium patens
Pp3c16_5660 2.0kb upstream 2.0kb upstream 7534 true Chr16: 3732907-3740440 Physcomitrium patens
Pp3c16_5660 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3738441-3740440 Physcomitrium patens
Pp3c16_5660 2.0kb downstream 2.0kb downstream 7534 true Chr16: 3730907-3738440 Physcomitrium patens
Pp3c16_5660 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3730907-3732906 Physcomitrium patens
Pp3c16_5660 5.0kb upstream 5.0kb upstream 10534 true Chr16: 3732907-3743440 Physcomitrium patens
Pp3c16_5660 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3738441-3743440 Physcomitrium patens
Pp3c16_5660 5.0kb downstream 5.0kb downstream 10534 true Chr16: 3727907-3738440 Physcomitrium patens
Pp3c16_5660 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3727907-3732906 Physcomitrium patens
Pp3c16_5660 10.0kb upstream 10.0kb upstream 15534 true Chr16: 3732907-3748440 Physcomitrium patens
Pp3c16_5660 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3738441-3748440 Physcomitrium patens
Pp3c16_5660 10.0kb downstream 10.0kb downstream 15534 true Chr16: 3722907-3738440 Physcomitrium patens
Pp3c16_5660 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3722907-3732906 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347292 5274 Embryophyte View MSA
123426199 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.152       Low
cufflinks 2.584        
cufflinks 1.035       Low
cufflinks 2.643       High
cufflinks 2.131        
cufflinks 2.2        
cufflinks 1.763        
cufflinks 1.037       Low
cufflinks 2.904       High
cufflinks 2.414        
cufflinks 1.733        
cufflinks 2.389        
cufflinks 1.507        
cufflinks 1.257       Low
cufflinks 1.756        
cufflinks 2.013        
cufflinks 2.208        
cufflinks 2.456        
cufflinks 2.71       High
cufflinks 2.478        
cufflinks 2.047        
cufflinks 2.036        
cufflinks 3.374       High
cufflinks 2.179        
cufflinks 1.69        
cufflinks 1.186       Low
cufflinks 2.061        
cufflinks 2.33        
cufflinks 1.412       Low
cufflinks 1.78        

0 Strain