Gene : Pp3c16_5410 P. patens v3.3
Defline:  (1 of 1) PTHR30031//PTHR30031:SF2 - PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP Genomic Order:  266
Name:  ? Pp3c16_5410 Secondary Identifier:  ? PAC:32986802
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens GLUCONEO-PWY Physcomitrium patens pathologic  
Ppatens PWY-561 Physcomitrium patens pathologic  
Ppatens PWY-7117 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_5410 0.5kb upstream 0.5kb upstream 5012 true Chr16: 3607078-3612089 Physcomitrium patens
Pp3c16_5410 0.5kb upstream 0.5kb upstream 500 false Chr16: 3607078-3607577 Physcomitrium patens
Pp3c16_5410 0.5kb downstream 0.5kb downstream 5012 true Chr16: 3607578-3612589 Physcomitrium patens
Pp3c16_5410 0.5kb downstream 0.5kb downstream 500 false Chr16: 3612090-3612589 Physcomitrium patens
Pp3c16_5410 1.0kb upstream 1.0kb upstream 5512 true Chr16: 3606578-3612089 Physcomitrium patens
Pp3c16_5410 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3606578-3607577 Physcomitrium patens
Pp3c16_5410 1.0kb downstream 1.0kb downstream 5512 true Chr16: 3607578-3613089 Physcomitrium patens
Pp3c16_5410 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3612090-3613089 Physcomitrium patens
Pp3c16_5410 2.0kb upstream 2.0kb upstream 6512 true Chr16: 3605578-3612089 Physcomitrium patens
Pp3c16_5410 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3605578-3607577 Physcomitrium patens
Pp3c16_5410 2.0kb downstream 2.0kb downstream 6512 true Chr16: 3607578-3614089 Physcomitrium patens
Pp3c16_5410 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3612090-3614089 Physcomitrium patens
Pp3c16_5410 5.0kb upstream 5.0kb upstream 9512 true Chr16: 3602578-3612089 Physcomitrium patens
Pp3c16_5410 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3602578-3607577 Physcomitrium patens
Pp3c16_5410 5.0kb downstream 5.0kb downstream 9512 true Chr16: 3607578-3617089 Physcomitrium patens
Pp3c16_5410 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3612090-3617089 Physcomitrium patens
Pp3c16_5410 10.0kb upstream 10.0kb upstream 14512 true Chr16: 3597578-3612089 Physcomitrium patens
Pp3c16_5410 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3597578-3607577 Physcomitrium patens
Pp3c16_5410 10.0kb downstream 10.0kb downstream 14512 true Chr16: 3607578-3622089 Physcomitrium patens
Pp3c16_5410 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3612090-3622089 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348901 5274 Embryophyte View MSA
123381068 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.821        
cufflinks 15.099        
cufflinks 14.398        
cufflinks 13.085        
cufflinks 11.595       Low
cufflinks 15.826        
cufflinks 11.439       Low
cufflinks 9.35       Low
cufflinks 18.25       High
cufflinks 13.427        
cufflinks 16.258        
cufflinks 17.574     High  
cufflinks 12.039        
cufflinks 15.574        
cufflinks 23.436     High High
cufflinks 16.482        
cufflinks 16.953        
cufflinks 14.301        
cufflinks 16.8        
cufflinks 16.032        
cufflinks 13.914        
cufflinks 9.182       Low
cufflinks 17.188        
cufflinks 16.094        
cufflinks 15.089        
cufflinks 11.746       Low
cufflinks 10.45       Low
cufflinks 15.293        
cufflinks 16.239        
cufflinks 19.321       High

0 Strain