Gene : Pp3c16_2230 P. patens v3.3
Defline:  (1 of 4) PTHR12925:SF0 - PROTEIN HIKESHI Genomic Order:  116
Name:  ? Pp3c16_2230 Secondary Identifier:  ? PAC:32984020
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_2230 0.5kb upstream 0.5kb upstream 3510 true Chr16: 1448539-1452048 Physcomitrium patens
Pp3c16_2230 0.5kb upstream 0.5kb upstream 500 false Chr16: 1451549-1452048 Physcomitrium patens
Pp3c16_2230 0.5kb downstream 0.5kb downstream 3510 true Chr16: 1448039-1451548 Physcomitrium patens
Pp3c16_2230 0.5kb downstream 0.5kb downstream 500 false Chr16: 1448039-1448538 Physcomitrium patens
Pp3c16_2230 1.0kb upstream 1.0kb upstream 4010 true Chr16: 1448539-1452548 Physcomitrium patens
Pp3c16_2230 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1451549-1452548 Physcomitrium patens
Pp3c16_2230 1.0kb downstream 1.0kb downstream 4010 true Chr16: 1447539-1451548 Physcomitrium patens
Pp3c16_2230 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1447539-1448538 Physcomitrium patens
Pp3c16_2230 2.0kb upstream 2.0kb upstream 5010 true Chr16: 1448539-1453548 Physcomitrium patens
Pp3c16_2230 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1451549-1453548 Physcomitrium patens
Pp3c16_2230 2.0kb downstream 2.0kb downstream 5010 true Chr16: 1446539-1451548 Physcomitrium patens
Pp3c16_2230 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1446539-1448538 Physcomitrium patens
Pp3c16_2230 5.0kb upstream 5.0kb upstream 8010 true Chr16: 1448539-1456548 Physcomitrium patens
Pp3c16_2230 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1451549-1456548 Physcomitrium patens
Pp3c16_2230 5.0kb downstream 5.0kb downstream 8010 true Chr16: 1443539-1451548 Physcomitrium patens
Pp3c16_2230 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1443539-1448538 Physcomitrium patens
Pp3c16_2230 10.0kb upstream 10.0kb upstream 13010 true Chr16: 1448539-1461548 Physcomitrium patens
Pp3c16_2230 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1451549-1461548 Physcomitrium patens
Pp3c16_2230 10.0kb downstream 10.0kb downstream 13010 true Chr16: 1438539-1451548 Physcomitrium patens
Pp3c16_2230 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1438539-1448538 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345488 5274 Embryophyte View MSA
123425277 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.971        
cufflinks 1.571        
cufflinks 2.083       High
cufflinks 2.084       High
cufflinks 1.555        
cufflinks 2.046        
cufflinks 1.506        
cufflinks 1.715        
cufflinks 1.59        
cufflinks 1.994        
cufflinks 2.283       High
cufflinks 2.676       High
cufflinks 1.526        
cufflinks 2.271       High
cufflinks 1.323       Low
cufflinks 1.366        
cufflinks 2.318       High
cufflinks 1.333       Low
cufflinks 1.745        
cufflinks 1.652        
cufflinks 1.112       Low
cufflinks 1.539        
cufflinks 1.667        
cufflinks 1.599        
cufflinks 1.661        
cufflinks 1.443        
cufflinks 1.145       Low
cufflinks 1.229       Low
cufflinks 1.606        
cufflinks 1.509        

0 Strain