Gene : Pp3c16_12180 P. patens v3.3
Defline:  (1 of 2) PF00092//PF02743//PF07714 - von Willebrand factor type A domain (VWA) // Cache domain (Cache_1) // Protein tyrosine kinase (Pkinase_Tyr) Genomic Order:  629
Name:  ? Pp3c16_12180 Secondary Identifier:  ? PAC:32985868
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_12180 0.5kb upstream 0.5kb upstream 5830 true Chr16: 7848118-7853947 Physcomitrium patens
Pp3c16_12180 0.5kb upstream 0.5kb upstream 500 false Chr16: 7848118-7848617 Physcomitrium patens
Pp3c16_12180 0.5kb downstream 0.5kb downstream 5830 true Chr16: 7848618-7854447 Physcomitrium patens
Pp3c16_12180 0.5kb downstream 0.5kb downstream 500 false Chr16: 7853948-7854447 Physcomitrium patens
Pp3c16_12180 1.0kb upstream 1.0kb upstream 6330 true Chr16: 7847618-7853947 Physcomitrium patens
Pp3c16_12180 1.0kb upstream 1.0kb upstream 1000 false Chr16: 7847618-7848617 Physcomitrium patens
Pp3c16_12180 1.0kb downstream 1.0kb downstream 6330 true Chr16: 7848618-7854947 Physcomitrium patens
Pp3c16_12180 1.0kb downstream 1.0kb downstream 1000 false Chr16: 7853948-7854947 Physcomitrium patens
Pp3c16_12180 2.0kb upstream 2.0kb upstream 7330 true Chr16: 7846618-7853947 Physcomitrium patens
Pp3c16_12180 2.0kb upstream 2.0kb upstream 2000 false Chr16: 7846618-7848617 Physcomitrium patens
Pp3c16_12180 2.0kb downstream 2.0kb downstream 7330 true Chr16: 7848618-7855947 Physcomitrium patens
Pp3c16_12180 2.0kb downstream 2.0kb downstream 2000 false Chr16: 7853948-7855947 Physcomitrium patens
Pp3c16_12180 5.0kb upstream 5.0kb upstream 10330 true Chr16: 7843618-7853947 Physcomitrium patens
Pp3c16_12180 5.0kb upstream 5.0kb upstream 5000 false Chr16: 7843618-7848617 Physcomitrium patens
Pp3c16_12180 5.0kb downstream 5.0kb downstream 10330 true Chr16: 7848618-7858947 Physcomitrium patens
Pp3c16_12180 5.0kb downstream 5.0kb downstream 5000 false Chr16: 7853948-7858947 Physcomitrium patens
Pp3c16_12180 10.0kb upstream 10.0kb upstream 15330 true Chr16: 7838618-7853947 Physcomitrium patens
Pp3c16_12180 10.0kb upstream 10.0kb upstream 10000 false Chr16: 7838618-7848617 Physcomitrium patens
Pp3c16_12180 10.0kb downstream 10.0kb downstream 15330 true Chr16: 7848618-7863947 Physcomitrium patens
Pp3c16_12180 10.0kb downstream 10.0kb downstream 10000 false Chr16: 7853948-7863947 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336535 5274 Embryophyte View MSA
123373358 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.348        
cufflinks 0.059     Low Low
cufflinks 0.109        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.741        
cufflinks 0.192        
cufflinks 0.244        
cufflinks 0.615        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.08     Low  
cufflinks 0.047     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.077     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.834       High
cufflinks 0.089        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.837       High
cufflinks 0.549        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.091     Low  

0 Strain