Gene : Pp3c17_23510 P. patens v3.3
Defline:  (1 of 2) PTHR12952 - SYS1 Genomic Order:  1123
Name:  ? Pp3c17_23510 Secondary Identifier:  ? PAC:32907820
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c17_23510 0.5kb upstream 0.5kb upstream 3905 true Chr17: 15287612-15291516 Physcomitrium patens
Pp3c17_23510 0.5kb upstream 0.5kb upstream 500 false Chr17: 15287612-15288111 Physcomitrium patens
Pp3c17_23510 0.5kb downstream 0.5kb downstream 3905 true Chr17: 15288112-15292016 Physcomitrium patens
Pp3c17_23510 0.5kb downstream 0.5kb downstream 500 false Chr17: 15291517-15292016 Physcomitrium patens
Pp3c17_23510 1.0kb upstream 1.0kb upstream 4405 true Chr17: 15287112-15291516 Physcomitrium patens
Pp3c17_23510 1.0kb upstream 1.0kb upstream 1000 false Chr17: 15287112-15288111 Physcomitrium patens
Pp3c17_23510 1.0kb downstream 1.0kb downstream 4405 true Chr17: 15288112-15292516 Physcomitrium patens
Pp3c17_23510 1.0kb downstream 1.0kb downstream 1000 false Chr17: 15291517-15292516 Physcomitrium patens
Pp3c17_23510 2.0kb upstream 2.0kb upstream 5405 true Chr17: 15286112-15291516 Physcomitrium patens
Pp3c17_23510 2.0kb upstream 2.0kb upstream 2000 false Chr17: 15286112-15288111 Physcomitrium patens
Pp3c17_23510 2.0kb downstream 2.0kb downstream 5405 true Chr17: 15288112-15293516 Physcomitrium patens
Pp3c17_23510 2.0kb downstream 2.0kb downstream 2000 false Chr17: 15291517-15293516 Physcomitrium patens
Pp3c17_23510 5.0kb upstream 5.0kb upstream 8405 true Chr17: 15283112-15291516 Physcomitrium patens
Pp3c17_23510 5.0kb upstream 5.0kb upstream 5000 false Chr17: 15283112-15288111 Physcomitrium patens
Pp3c17_23510 5.0kb downstream 5.0kb downstream 8405 true Chr17: 15288112-15296516 Physcomitrium patens
Pp3c17_23510 5.0kb downstream 5.0kb downstream 5000 false Chr17: 15291517-15296516 Physcomitrium patens
Pp3c17_23510 10.0kb upstream 10.0kb upstream 13405 true Chr17: 15278112-15291516 Physcomitrium patens
Pp3c17_23510 10.0kb upstream 10.0kb upstream 10000 false Chr17: 15278112-15288111 Physcomitrium patens
Pp3c17_23510 10.0kb downstream 10.0kb downstream 13405 true Chr17: 15288112-15301516 Physcomitrium patens
Pp3c17_23510 10.0kb downstream 10.0kb downstream 10000 false Chr17: 15291517-15301516 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345746 5274 Embryophyte View MSA
123428394 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.46     High  
cufflinks 19.938     High Low
cufflinks 21.409     High Low
cufflinks 41.536     High High
cufflinks 26.168     High  
cufflinks 40.34     High High
cufflinks 41.803     High High
cufflinks 18.714     High Low
cufflinks 39.733     High  
cufflinks 19.45     High Low
cufflinks 40.561     High High
cufflinks 39.873     High  
cufflinks 33.891     High  
cufflinks 38.711     High  
cufflinks 28.989     High  
cufflinks 18.901       Low
cufflinks 14.848       Low
cufflinks 28.657     High  
cufflinks 39.145     High  
cufflinks 34.539     High  
cufflinks 26.1     High  
cufflinks 22.271     High  
cufflinks 40.086     High High
cufflinks 22.315     High  
cufflinks 23.691     High  
cufflinks 30.873     High  
cufflinks 20.358       Low
cufflinks 33.167     High  
cufflinks 40.925     High High
cufflinks 31.862     High  

0 Strain