Gene : Pp3c17_16870 P. patens v3.3
Defline:  (1 of 1) PTHR22069 - MITOCHONDRIAL RIBOSOMAL PROTEIN S18 Genomic Order:  772
Name:  ? Pp3c17_16870 Secondary Identifier:  ? PAC:32906442
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c17_16870 0.5kb upstream 0.5kb upstream 2974 true Chr17: 11478820-11481793 Physcomitrium patens
Pp3c17_16870 0.5kb upstream 0.5kb upstream 500 false Chr17: 11481294-11481793 Physcomitrium patens
Pp3c17_16870 0.5kb downstream 0.5kb downstream 2974 true Chr17: 11478320-11481293 Physcomitrium patens
Pp3c17_16870 0.5kb downstream 0.5kb downstream 500 false Chr17: 11478320-11478819 Physcomitrium patens
Pp3c17_16870 1.0kb upstream 1.0kb upstream 3474 true Chr17: 11478820-11482293 Physcomitrium patens
Pp3c17_16870 1.0kb upstream 1.0kb upstream 1000 false Chr17: 11481294-11482293 Physcomitrium patens
Pp3c17_16870 1.0kb downstream 1.0kb downstream 3474 true Chr17: 11477820-11481293 Physcomitrium patens
Pp3c17_16870 1.0kb downstream 1.0kb downstream 1000 false Chr17: 11477820-11478819 Physcomitrium patens
Pp3c17_16870 2.0kb upstream 2.0kb upstream 4474 true Chr17: 11478820-11483293 Physcomitrium patens
Pp3c17_16870 2.0kb upstream 2.0kb upstream 2000 false Chr17: 11481294-11483293 Physcomitrium patens
Pp3c17_16870 2.0kb downstream 2.0kb downstream 4474 true Chr17: 11476820-11481293 Physcomitrium patens
Pp3c17_16870 2.0kb downstream 2.0kb downstream 2000 false Chr17: 11476820-11478819 Physcomitrium patens
Pp3c17_16870 5.0kb upstream 5.0kb upstream 7474 true Chr17: 11478820-11486293 Physcomitrium patens
Pp3c17_16870 5.0kb upstream 5.0kb upstream 5000 false Chr17: 11481294-11486293 Physcomitrium patens
Pp3c17_16870 5.0kb downstream 5.0kb downstream 7474 true Chr17: 11473820-11481293 Physcomitrium patens
Pp3c17_16870 5.0kb downstream 5.0kb downstream 5000 false Chr17: 11473820-11478819 Physcomitrium patens
Pp3c17_16870 10.0kb upstream 10.0kb upstream 12474 true Chr17: 11478820-11491293 Physcomitrium patens
Pp3c17_16870 10.0kb upstream 10.0kb upstream 10000 false Chr17: 11481294-11491293 Physcomitrium patens
Pp3c17_16870 10.0kb downstream 10.0kb downstream 12474 true Chr17: 11468820-11481293 Physcomitrium patens
Pp3c17_16870 10.0kb downstream 10.0kb downstream 10000 false Chr17: 11468820-11478819 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342647 5274 Embryophyte View MSA
123427169 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.002     Low Low
cufflinks 0.002     Low Low
cufflinks 0.004     Low  
cufflinks 0.031     Low High
cufflinks 0.001     Low Low
cufflinks 0.019     Low  
cufflinks 0.016     Low  
cufflinks 0.004     Low  
cufflinks 0.007     Low  
cufflinks 0.001     Low Low
cufflinks 0.003     Low  
cufflinks 0.056     Low High
cufflinks 0.01     Low  
cufflinks 0.003     Low  
cufflinks 0.006     Low  
cufflinks 0.004     Low  
cufflinks 0.007     Low  
cufflinks 0.002     Low Low
cufflinks 0.019     Low  
cufflinks 0.008     Low  
cufflinks 0.017     Low  
cufflinks 0.008     Low  
cufflinks 0.021     Low  
cufflinks 0.086     Low High
cufflinks 0.032     Low High
cufflinks 0.012     Low  
cufflinks 0.007     Low  
cufflinks 0.023     Low  
cufflinks 0.005     Low  
cufflinks 0.013     Low  

0 Strain