Gene : Pp3c18_12670 P. patens v3.3
Defline:  (1 of 6) PTHR10943 - 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT Genomic Order:  499
Name:  ? Pp3c18_12670 Secondary Identifier:  ? PAC:32981536
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c18_12670 0.5kb upstream 0.5kb upstream 9188 true Chr18: 9298209-9307396 Physcomitrium patens
Pp3c18_12670 0.5kb upstream 0.5kb upstream 500 false Chr18: 9306897-9307396 Physcomitrium patens
Pp3c18_12670 0.5kb downstream 0.5kb downstream 9188 true Chr18: 9297709-9306896 Physcomitrium patens
Pp3c18_12670 0.5kb downstream 0.5kb downstream 500 false Chr18: 9297709-9298208 Physcomitrium patens
Pp3c18_12670 1.0kb upstream 1.0kb upstream 9688 true Chr18: 9298209-9307896 Physcomitrium patens
Pp3c18_12670 1.0kb upstream 1.0kb upstream 1000 false Chr18: 9306897-9307896 Physcomitrium patens
Pp3c18_12670 1.0kb downstream 1.0kb downstream 9688 true Chr18: 9297209-9306896 Physcomitrium patens
Pp3c18_12670 1.0kb downstream 1.0kb downstream 1000 false Chr18: 9297209-9298208 Physcomitrium patens
Pp3c18_12670 2.0kb upstream 2.0kb upstream 10688 true Chr18: 9298209-9308896 Physcomitrium patens
Pp3c18_12670 2.0kb upstream 2.0kb upstream 2000 false Chr18: 9306897-9308896 Physcomitrium patens
Pp3c18_12670 2.0kb downstream 2.0kb downstream 10688 true Chr18: 9296209-9306896 Physcomitrium patens
Pp3c18_12670 2.0kb downstream 2.0kb downstream 2000 false Chr18: 9296209-9298208 Physcomitrium patens
Pp3c18_12670 5.0kb upstream 5.0kb upstream 13688 true Chr18: 9298209-9311896 Physcomitrium patens
Pp3c18_12670 5.0kb upstream 5.0kb upstream 5000 false Chr18: 9306897-9311896 Physcomitrium patens
Pp3c18_12670 5.0kb downstream 5.0kb downstream 13688 true Chr18: 9293209-9306896 Physcomitrium patens
Pp3c18_12670 5.0kb downstream 5.0kb downstream 5000 false Chr18: 9293209-9298208 Physcomitrium patens
Pp3c18_12670 10.0kb upstream 10.0kb upstream 18688 true Chr18: 9298209-9316896 Physcomitrium patens
Pp3c18_12670 10.0kb upstream 10.0kb upstream 10000 false Chr18: 9306897-9316896 Physcomitrium patens
Pp3c18_12670 10.0kb downstream 10.0kb downstream 18688 true Chr18: 9288209-9306896 Physcomitrium patens
Pp3c18_12670 10.0kb downstream 10.0kb downstream 10000 false Chr18: 9288209-9298208 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123428994 5275 Viridiplantae View MSA
121346933 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 70.787     High  
cufflinks 102.432     High  
cufflinks 52.795     High Low
cufflinks 62.096     High  
cufflinks 308.625     High High
cufflinks 93.568     High  
cufflinks 70.673     High  
cufflinks 209.169     High High
cufflinks 120.835     High  
cufflinks 99.393     High  
cufflinks 81.585     High  
cufflinks 125.746     High  
cufflinks 118.384     High  
cufflinks 56.333     High Low
cufflinks 39.608     High Low
cufflinks 85.03     High  
cufflinks 60.031     High  
cufflinks 67.675     High  
cufflinks 76.472     High  
cufflinks 63.096     High  
cufflinks 85.793     High  
cufflinks 291.598     High High
cufflinks 74.015     High  
cufflinks 95.747     High  
cufflinks 78.474     High  
cufflinks 102.679     High  
cufflinks 132.623     High  
cufflinks 63.877     High  
cufflinks 77.741     High  
cufflinks 87.685     High  

0 Strain