Gene : Pp3c17_10120 P. patens v3.3
Defline:  (1 of 6) PF11937 - Protein of unknown function (DUF3455) (DUF3455) Genomic Order:  441
Name:  ? Pp3c17_10120 Secondary Identifier:  ? PAC:32906707
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c17_10120 0.5kb upstream 0.5kb upstream 2275 true Chr17: 7176447-7178721 Physcomitrium patens
Pp3c17_10120 0.5kb upstream 0.5kb upstream 500 false Chr17: 7178222-7178721 Physcomitrium patens
Pp3c17_10120 0.5kb downstream 0.5kb downstream 2275 true Chr17: 7175947-7178221 Physcomitrium patens
Pp3c17_10120 0.5kb downstream 0.5kb downstream 500 false Chr17: 7175947-7176446 Physcomitrium patens
Pp3c17_10120 1.0kb upstream 1.0kb upstream 2775 true Chr17: 7176447-7179221 Physcomitrium patens
Pp3c17_10120 1.0kb upstream 1.0kb upstream 1000 false Chr17: 7178222-7179221 Physcomitrium patens
Pp3c17_10120 1.0kb downstream 1.0kb downstream 2775 true Chr17: 7175447-7178221 Physcomitrium patens
Pp3c17_10120 1.0kb downstream 1.0kb downstream 1000 false Chr17: 7175447-7176446 Physcomitrium patens
Pp3c17_10120 2.0kb upstream 2.0kb upstream 3775 true Chr17: 7176447-7180221 Physcomitrium patens
Pp3c17_10120 2.0kb upstream 2.0kb upstream 2000 false Chr17: 7178222-7180221 Physcomitrium patens
Pp3c17_10120 2.0kb downstream 2.0kb downstream 3775 true Chr17: 7174447-7178221 Physcomitrium patens
Pp3c17_10120 2.0kb downstream 2.0kb downstream 2000 false Chr17: 7174447-7176446 Physcomitrium patens
Pp3c17_10120 5.0kb upstream 5.0kb upstream 6775 true Chr17: 7176447-7183221 Physcomitrium patens
Pp3c17_10120 5.0kb upstream 5.0kb upstream 5000 false Chr17: 7178222-7183221 Physcomitrium patens
Pp3c17_10120 5.0kb downstream 5.0kb downstream 6775 true Chr17: 7171447-7178221 Physcomitrium patens
Pp3c17_10120 5.0kb downstream 5.0kb downstream 5000 false Chr17: 7171447-7176446 Physcomitrium patens
Pp3c17_10120 10.0kb upstream 10.0kb upstream 11775 true Chr17: 7176447-7188221 Physcomitrium patens
Pp3c17_10120 10.0kb upstream 10.0kb upstream 10000 false Chr17: 7178222-7188221 Physcomitrium patens
Pp3c17_10120 10.0kb downstream 10.0kb downstream 11775 true Chr17: 7166447-7178221 Physcomitrium patens
Pp3c17_10120 10.0kb downstream 10.0kb downstream 10000 false Chr17: 7166447-7176446 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342639 5274 Embryophyte View MSA
123379133 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.239       Low
cufflinks 6.853        
cufflinks 22.698     High High
cufflinks 0.775        
cufflinks 1.6        
cufflinks 0.359        
cufflinks 0.116       Low
cufflinks 0.709        
cufflinks 0.691        
cufflinks 0.303        
cufflinks 0.075       Low
cufflinks 2.74        
cufflinks 0.629        
cufflinks 0.123       Low
cufflinks 0.748        
cufflinks 3.842        
cufflinks 29.938     High High
cufflinks 0.966        
cufflinks 3.39        
cufflinks 3.636        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.055        
cufflinks 2.083        
cufflinks 0.045     Low Low
cufflinks 6.93        
cufflinks 0.908        
cufflinks 2.178        
cufflinks 8.501        
cufflinks 11.099       High
cufflinks 14.929       High

0 Strain