Gene : Pp3c18_1620 P. patens v3.3
Genomic Order:  47 Name:  ? Pp3c18_1620
Secondary Identifier:  ? PAC:32983489
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c18_1620 0.5kb upstream 0.5kb upstream 3276 true Chr18: 1555119-1558394 Physcomitrium patens
Pp3c18_1620 0.5kb upstream 0.5kb upstream 500 false Chr18: 1557895-1558394 Physcomitrium patens
Pp3c18_1620 0.5kb downstream 0.5kb downstream 3276 true Chr18: 1554619-1557894 Physcomitrium patens
Pp3c18_1620 0.5kb downstream 0.5kb downstream 500 false Chr18: 1554619-1555118 Physcomitrium patens
Pp3c18_1620 1.0kb upstream 1.0kb upstream 3776 true Chr18: 1555119-1558894 Physcomitrium patens
Pp3c18_1620 1.0kb upstream 1.0kb upstream 1000 false Chr18: 1557895-1558894 Physcomitrium patens
Pp3c18_1620 1.0kb downstream 1.0kb downstream 3776 true Chr18: 1554119-1557894 Physcomitrium patens
Pp3c18_1620 1.0kb downstream 1.0kb downstream 1000 false Chr18: 1554119-1555118 Physcomitrium patens
Pp3c18_1620 2.0kb upstream 2.0kb upstream 4776 true Chr18: 1555119-1559894 Physcomitrium patens
Pp3c18_1620 2.0kb upstream 2.0kb upstream 2000 false Chr18: 1557895-1559894 Physcomitrium patens
Pp3c18_1620 2.0kb downstream 2.0kb downstream 4776 true Chr18: 1553119-1557894 Physcomitrium patens
Pp3c18_1620 2.0kb downstream 2.0kb downstream 2000 false Chr18: 1553119-1555118 Physcomitrium patens
Pp3c18_1620 5.0kb upstream 5.0kb upstream 7776 true Chr18: 1555119-1562894 Physcomitrium patens
Pp3c18_1620 5.0kb upstream 5.0kb upstream 5000 false Chr18: 1557895-1562894 Physcomitrium patens
Pp3c18_1620 5.0kb downstream 5.0kb downstream 7776 true Chr18: 1550119-1557894 Physcomitrium patens
Pp3c18_1620 5.0kb downstream 5.0kb downstream 5000 false Chr18: 1550119-1555118 Physcomitrium patens
Pp3c18_1620 10.0kb upstream 10.0kb upstream 12776 true Chr18: 1555119-1567894 Physcomitrium patens
Pp3c18_1620 10.0kb upstream 10.0kb upstream 10000 false Chr18: 1557895-1567894 Physcomitrium patens
Pp3c18_1620 10.0kb downstream 10.0kb downstream 12776 true Chr18: 1545119-1557894 Physcomitrium patens
Pp3c18_1620 10.0kb downstream 10.0kb downstream 10000 false Chr18: 1545119-1555118 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121335841 5274 Embryophyte Singleton cluster - no MSA
123372688 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.129        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.588        
cufflinks 0.109        
cufflinks 0.039     Low Low
cufflinks 22.389     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.635        
cufflinks 0.044     Low Low
cufflinks 13.268       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.225        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.181        
cufflinks 76.78     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.089        
cufflinks 0.115        
cufflinks 0.155        
cufflinks 0.951        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.14        
cufflinks 0.681        
cufflinks 0.065     Low  
cufflinks 0.673        
cufflinks 1.063        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.637       High
cufflinks 0.041     Low Low

0 Strain