Gene : Pp3c18_19220 P. patens v3.3
Defline:  (1 of 2) PTHR14503:SF3 - 50S RIBOSOMAL PROTEIN L34, CHLOROPLASTIC Genomic Order:  775
Name:  ? Pp3c18_19220 Secondary Identifier:  ? PAC:32981921
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c18_19220 0.5kb upstream 0.5kb upstream 1877 true Chr18: 13665275-13667151 Physcomitrium patens
Pp3c18_19220 0.5kb upstream 0.5kb upstream 500 false Chr18: 13666652-13667151 Physcomitrium patens
Pp3c18_19220 0.5kb downstream 0.5kb downstream 1877 true Chr18: 13664775-13666651 Physcomitrium patens
Pp3c18_19220 0.5kb downstream 0.5kb downstream 500 false Chr18: 13664775-13665274 Physcomitrium patens
Pp3c18_19220 1.0kb upstream 1.0kb upstream 2377 true Chr18: 13665275-13667651 Physcomitrium patens
Pp3c18_19220 1.0kb upstream 1.0kb upstream 1000 false Chr18: 13666652-13667651 Physcomitrium patens
Pp3c18_19220 1.0kb downstream 1.0kb downstream 2377 true Chr18: 13664275-13666651 Physcomitrium patens
Pp3c18_19220 1.0kb downstream 1.0kb downstream 1000 false Chr18: 13664275-13665274 Physcomitrium patens
Pp3c18_19220 2.0kb upstream 2.0kb upstream 3377 true Chr18: 13665275-13668651 Physcomitrium patens
Pp3c18_19220 2.0kb upstream 2.0kb upstream 2000 false Chr18: 13666652-13668651 Physcomitrium patens
Pp3c18_19220 2.0kb downstream 2.0kb downstream 3377 true Chr18: 13663275-13666651 Physcomitrium patens
Pp3c18_19220 2.0kb downstream 2.0kb downstream 2000 false Chr18: 13663275-13665274 Physcomitrium patens
Pp3c18_19220 5.0kb upstream 5.0kb upstream 6377 true Chr18: 13665275-13671651 Physcomitrium patens
Pp3c18_19220 5.0kb upstream 5.0kb upstream 5000 false Chr18: 13666652-13671651 Physcomitrium patens
Pp3c18_19220 5.0kb downstream 5.0kb downstream 6377 true Chr18: 13660275-13666651 Physcomitrium patens
Pp3c18_19220 5.0kb downstream 5.0kb downstream 5000 false Chr18: 13660275-13665274 Physcomitrium patens
Pp3c18_19220 10.0kb upstream 10.0kb upstream 11377 true Chr18: 13665275-13676651 Physcomitrium patens
Pp3c18_19220 10.0kb upstream 10.0kb upstream 10000 false Chr18: 13666652-13676651 Physcomitrium patens
Pp3c18_19220 10.0kb downstream 10.0kb downstream 11377 true Chr18: 13655275-13666651 Physcomitrium patens
Pp3c18_19220 10.0kb downstream 10.0kb downstream 10000 false Chr18: 13655275-13665274 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344313 5274 Embryophyte View MSA
123425891 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.693        
cufflinks 2.255       High
cufflinks 0.614        
cufflinks 0.708        
cufflinks 0.73        
cufflinks 0.76        
cufflinks 2.152       High
cufflinks 1.473        
cufflinks 0.092       Low
cufflinks 0.824        
cufflinks 1.934       High
cufflinks 0.481        
cufflinks 0.994        
cufflinks 0.2       Low
cufflinks 0.344        
cufflinks 0.513        
cufflinks 0.31        
cufflinks 1.447        
cufflinks 2.243       High
cufflinks 0.33        
cufflinks 0.731        
cufflinks 0.201       Low
cufflinks 0.526        
cufflinks 2.126       High
cufflinks 0.723        
cufflinks 0.093       Low
cufflinks 1.475        
cufflinks 0.651        
cufflinks 0.315        
cufflinks 0.708        

0 Strain