Gene : Pp3c19_20960 P. patens v3.3
Defline:  (1 of 2) PTHR22936:SF4 - RHOMBOID FAMILY PROTEIN Genomic Order:  962
Name:  ? Pp3c19_20960 Secondary Identifier:  ? PAC:32938134
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_20960 0.5kb upstream 0.5kb upstream 5185 true Chr19: 13938244-13943428 Physcomitrium patens
Pp3c19_20960 0.5kb upstream 0.5kb upstream 500 false Chr19: 13942929-13943428 Physcomitrium patens
Pp3c19_20960 0.5kb downstream 0.5kb downstream 5185 true Chr19: 13937744-13942928 Physcomitrium patens
Pp3c19_20960 0.5kb downstream 0.5kb downstream 500 false Chr19: 13937744-13938243 Physcomitrium patens
Pp3c19_20960 1.0kb upstream 1.0kb upstream 5685 true Chr19: 13938244-13943928 Physcomitrium patens
Pp3c19_20960 1.0kb upstream 1.0kb upstream 1000 false Chr19: 13942929-13943928 Physcomitrium patens
Pp3c19_20960 1.0kb downstream 1.0kb downstream 5685 true Chr19: 13937244-13942928 Physcomitrium patens
Pp3c19_20960 1.0kb downstream 1.0kb downstream 1000 false Chr19: 13937244-13938243 Physcomitrium patens
Pp3c19_20960 2.0kb upstream 2.0kb upstream 6685 true Chr19: 13938244-13944928 Physcomitrium patens
Pp3c19_20960 2.0kb upstream 2.0kb upstream 2000 false Chr19: 13942929-13944928 Physcomitrium patens
Pp3c19_20960 2.0kb downstream 2.0kb downstream 6685 true Chr19: 13936244-13942928 Physcomitrium patens
Pp3c19_20960 2.0kb downstream 2.0kb downstream 2000 false Chr19: 13936244-13938243 Physcomitrium patens
Pp3c19_20960 5.0kb upstream 5.0kb upstream 9685 true Chr19: 13938244-13947928 Physcomitrium patens
Pp3c19_20960 5.0kb upstream 5.0kb upstream 5000 false Chr19: 13942929-13947928 Physcomitrium patens
Pp3c19_20960 5.0kb downstream 5.0kb downstream 9685 true Chr19: 13933244-13942928 Physcomitrium patens
Pp3c19_20960 5.0kb downstream 5.0kb downstream 5000 false Chr19: 13933244-13938243 Physcomitrium patens
Pp3c19_20960 10.0kb upstream 10.0kb upstream 14685 true Chr19: 13938244-13952928 Physcomitrium patens
Pp3c19_20960 10.0kb upstream 10.0kb upstream 10000 false Chr19: 13942929-13952928 Physcomitrium patens
Pp3c19_20960 10.0kb downstream 10.0kb downstream 14685 true Chr19: 13928244-13942928 Physcomitrium patens
Pp3c19_20960 10.0kb downstream 10.0kb downstream 10000 false Chr19: 13928244-13938243 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346817 5274 Embryophyte View MSA
123428054 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.727     High  
cufflinks 27.18     High  
cufflinks 22.332     High  
cufflinks 22.576     High  
cufflinks 26.285     High  
cufflinks 46.689     High  
cufflinks 32.981     High  
cufflinks 5.066       Low
cufflinks 30.551     High  
cufflinks 56.777     High  
cufflinks 16.219       Low
cufflinks 63.036     High High
cufflinks 28.479     High  
cufflinks 31.978     High  
cufflinks 42.136     High  
cufflinks 41.317     High  
cufflinks 19.706     High  
cufflinks 17.006        
cufflinks 71.661     High High
cufflinks 51.968     High  
cufflinks 32.243     High  
cufflinks 39.057     High  
cufflinks 6.411       Low
cufflinks 31.831     High  
cufflinks 34.829     High  
cufflinks 30.278     High  
cufflinks 37.804     High  
cufflinks 38.055     High  
cufflinks 56.987     High High
cufflinks 104.296     High High

0 Strain