Gene : Pp3c19_14820 P. patens v3.3
Defline:  (1 of 1) PTHR11097:SF9 - EXOSOME COMPLEX COMPONENT RRP43 Genomic Order:  701
Name:  ? Pp3c19_14820 Secondary Identifier:  ? PAC:32937990
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_14820 0.5kb upstream 0.5kb upstream 3750 true Chr19: 9810642-9814391 Physcomitrium patens
Pp3c19_14820 0.5kb upstream 0.5kb upstream 500 false Chr19: 9810642-9811141 Physcomitrium patens
Pp3c19_14820 0.5kb downstream 0.5kb downstream 3750 true Chr19: 9811142-9814891 Physcomitrium patens
Pp3c19_14820 0.5kb downstream 0.5kb downstream 500 false Chr19: 9814392-9814891 Physcomitrium patens
Pp3c19_14820 1.0kb upstream 1.0kb upstream 4250 true Chr19: 9810142-9814391 Physcomitrium patens
Pp3c19_14820 1.0kb upstream 1.0kb upstream 1000 false Chr19: 9810142-9811141 Physcomitrium patens
Pp3c19_14820 1.0kb downstream 1.0kb downstream 4250 true Chr19: 9811142-9815391 Physcomitrium patens
Pp3c19_14820 1.0kb downstream 1.0kb downstream 1000 false Chr19: 9814392-9815391 Physcomitrium patens
Pp3c19_14820 2.0kb upstream 2.0kb upstream 5250 true Chr19: 9809142-9814391 Physcomitrium patens
Pp3c19_14820 2.0kb upstream 2.0kb upstream 2000 false Chr19: 9809142-9811141 Physcomitrium patens
Pp3c19_14820 2.0kb downstream 2.0kb downstream 5250 true Chr19: 9811142-9816391 Physcomitrium patens
Pp3c19_14820 2.0kb downstream 2.0kb downstream 2000 false Chr19: 9814392-9816391 Physcomitrium patens
Pp3c19_14820 5.0kb upstream 5.0kb upstream 8250 true Chr19: 9806142-9814391 Physcomitrium patens
Pp3c19_14820 5.0kb upstream 5.0kb upstream 5000 false Chr19: 9806142-9811141 Physcomitrium patens
Pp3c19_14820 5.0kb downstream 5.0kb downstream 8250 true Chr19: 9811142-9819391 Physcomitrium patens
Pp3c19_14820 5.0kb downstream 5.0kb downstream 5000 false Chr19: 9814392-9819391 Physcomitrium patens
Pp3c19_14820 10.0kb upstream 10.0kb upstream 13250 true Chr19: 9801142-9814391 Physcomitrium patens
Pp3c19_14820 10.0kb upstream 10.0kb upstream 10000 false Chr19: 9801142-9811141 Physcomitrium patens
Pp3c19_14820 10.0kb downstream 10.0kb downstream 13250 true Chr19: 9811142-9824391 Physcomitrium patens
Pp3c19_14820 10.0kb downstream 10.0kb downstream 10000 false Chr19: 9814392-9824391 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346499 5274 Embryophyte View MSA
123425842 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.823       Low
cufflinks 6.895       Low
cufflinks 12.776        
cufflinks 5.9       Low
cufflinks 13.495       High
cufflinks 12.821        
cufflinks 9.382        
cufflinks 6.383       Low
cufflinks 10.669        
cufflinks 13.465       High
cufflinks 10.697        
cufflinks 8.975        
cufflinks 9.265        
cufflinks 14.564       High
cufflinks 12.438        
cufflinks 8.595        
cufflinks 6.249       Low
cufflinks 11.435        
cufflinks 15.003       High
cufflinks 9.943        
cufflinks 15.451       High
cufflinks 12.631        
cufflinks 8.614        
cufflinks 12.195        
cufflinks 12.945        
cufflinks 12.73        
cufflinks 6.588       Low
cufflinks 5.209       Low
cufflinks 6.683       Low
cufflinks 9.069        

0 Strain