Gene : Pp3c19_1870 P. patens v3.3
Defline:  (1 of 1) PTHR13720:SF14 - WD REPEAT-CONTAINING PROTEIN 16 Genomic Order:  94
Name:  ? Pp3c19_1870 Secondary Identifier:  ? PAC:32939118
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_1870 0.5kb upstream 0.5kb upstream 4274 true Chr19: 905388-909661 Physcomitrium patens
Pp3c19_1870 0.5kb upstream 0.5kb upstream 500 false Chr19: 905388-905887 Physcomitrium patens
Pp3c19_1870 0.5kb downstream 0.5kb downstream 4274 true Chr19: 905888-910161 Physcomitrium patens
Pp3c19_1870 0.5kb downstream 0.5kb downstream 500 false Chr19: 909662-910161 Physcomitrium patens
Pp3c19_1870 1.0kb upstream 1.0kb upstream 4774 true Chr19: 904888-909661 Physcomitrium patens
Pp3c19_1870 1.0kb upstream 1.0kb upstream 1000 false Chr19: 904888-905887 Physcomitrium patens
Pp3c19_1870 1.0kb downstream 1.0kb downstream 4774 true Chr19: 905888-910661 Physcomitrium patens
Pp3c19_1870 1.0kb downstream 1.0kb downstream 1000 false Chr19: 909662-910661 Physcomitrium patens
Pp3c19_1870 2.0kb upstream 2.0kb upstream 5774 true Chr19: 903888-909661 Physcomitrium patens
Pp3c19_1870 2.0kb upstream 2.0kb upstream 2000 false Chr19: 903888-905887 Physcomitrium patens
Pp3c19_1870 2.0kb downstream 2.0kb downstream 5774 true Chr19: 905888-911661 Physcomitrium patens
Pp3c19_1870 2.0kb downstream 2.0kb downstream 2000 false Chr19: 909662-911661 Physcomitrium patens
Pp3c19_1870 5.0kb upstream 5.0kb upstream 8774 true Chr19: 900888-909661 Physcomitrium patens
Pp3c19_1870 5.0kb upstream 5.0kb upstream 5000 false Chr19: 900888-905887 Physcomitrium patens
Pp3c19_1870 5.0kb downstream 5.0kb downstream 8774 true Chr19: 905888-914661 Physcomitrium patens
Pp3c19_1870 5.0kb downstream 5.0kb downstream 5000 false Chr19: 909662-914661 Physcomitrium patens
Pp3c19_1870 10.0kb upstream 10.0kb upstream 13774 true Chr19: 895888-909661 Physcomitrium patens
Pp3c19_1870 10.0kb upstream 10.0kb upstream 10000 false Chr19: 895888-905887 Physcomitrium patens
Pp3c19_1870 10.0kb downstream 10.0kb downstream 13774 true Chr19: 905888-919661 Physcomitrium patens
Pp3c19_1870 10.0kb downstream 10.0kb downstream 10000 false Chr19: 909662-919661 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343293 5274 Embryophyte View MSA
123428044 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.023     Low  
cufflinks 0.162       High
cufflinks 0.002     Low Low
cufflinks 0.049     Low  
cufflinks 0.091     Low  
cufflinks 0.016     Low  
cufflinks 0.018     Low  
cufflinks 0.077     Low  
cufflinks 0.053     Low  
cufflinks 0.09        
cufflinks 0.047     Low  
cufflinks 0.114       High
cufflinks 0.037     Low  
cufflinks 0.052     Low  
cufflinks 0.004     Low Low
cufflinks 0.015     Low  
cufflinks 0.058     Low  
cufflinks 0.01     Low Low
cufflinks 0.194       High
cufflinks 0.011     Low  
cufflinks 0.034     Low  
cufflinks 0.037     Low  
cufflinks 0.134       High
cufflinks 0.007     Low Low
cufflinks 0.145       High
cufflinks 0.003     Low Low
cufflinks 0.064     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.059     Low  
cufflinks 0.081        

0 Strain