Gene : Pp3c19_2540 P. patens v3.3
Defline:  (1 of 4) PTHR14969:SF13 - AT30094P Genomic Order:  117
Name:  ? Pp3c19_2540 Secondary Identifier:  ? PAC:32938221
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens TRIGLSYN-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_2540 0.5kb upstream 0.5kb upstream 3485 true Chr19: 1419852-1423336 Physcomitrium patens
Pp3c19_2540 0.5kb upstream 0.5kb upstream 500 false Chr19: 1419852-1420351 Physcomitrium patens
Pp3c19_2540 0.5kb downstream 0.5kb downstream 3485 true Chr19: 1420352-1423836 Physcomitrium patens
Pp3c19_2540 0.5kb downstream 0.5kb downstream 500 false Chr19: 1423337-1423836 Physcomitrium patens
Pp3c19_2540 1.0kb upstream 1.0kb upstream 3985 true Chr19: 1419352-1423336 Physcomitrium patens
Pp3c19_2540 1.0kb upstream 1.0kb upstream 1000 false Chr19: 1419352-1420351 Physcomitrium patens
Pp3c19_2540 1.0kb downstream 1.0kb downstream 3985 true Chr19: 1420352-1424336 Physcomitrium patens
Pp3c19_2540 1.0kb downstream 1.0kb downstream 1000 false Chr19: 1423337-1424336 Physcomitrium patens
Pp3c19_2540 2.0kb upstream 2.0kb upstream 4985 true Chr19: 1418352-1423336 Physcomitrium patens
Pp3c19_2540 2.0kb upstream 2.0kb upstream 2000 false Chr19: 1418352-1420351 Physcomitrium patens
Pp3c19_2540 2.0kb downstream 2.0kb downstream 4985 true Chr19: 1420352-1425336 Physcomitrium patens
Pp3c19_2540 2.0kb downstream 2.0kb downstream 2000 false Chr19: 1423337-1425336 Physcomitrium patens
Pp3c19_2540 5.0kb upstream 5.0kb upstream 7985 true Chr19: 1415352-1423336 Physcomitrium patens
Pp3c19_2540 5.0kb upstream 5.0kb upstream 5000 false Chr19: 1415352-1420351 Physcomitrium patens
Pp3c19_2540 5.0kb downstream 5.0kb downstream 7985 true Chr19: 1420352-1428336 Physcomitrium patens
Pp3c19_2540 5.0kb downstream 5.0kb downstream 5000 false Chr19: 1423337-1428336 Physcomitrium patens
Pp3c19_2540 10.0kb upstream 10.0kb upstream 12985 true Chr19: 1410352-1423336 Physcomitrium patens
Pp3c19_2540 10.0kb upstream 10.0kb upstream 10000 false Chr19: 1410352-1420351 Physcomitrium patens
Pp3c19_2540 10.0kb downstream 10.0kb downstream 12985 true Chr19: 1420352-1433336 Physcomitrium patens
Pp3c19_2540 10.0kb downstream 10.0kb downstream 10000 false Chr19: 1423337-1433336 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349083 5274 Embryophyte View MSA
123381157 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.963        
cufflinks 9.535        
cufflinks 9.495        
cufflinks 12.024        
cufflinks 2.416       Low
cufflinks 7.286        
cufflinks 24.345     High High
cufflinks 11.011        
cufflinks 10.232        
cufflinks 0.849       Low
cufflinks 7.452        
cufflinks 3.051       Low
cufflinks 10.008        
cufflinks 11.066        
cufflinks 10.201        
cufflinks 1.552       Low
cufflinks 13.092        
cufflinks 17.711       High
cufflinks 9.151        
cufflinks 0.997       Low
cufflinks 4.317        
cufflinks 11.925        
cufflinks 8.254        
cufflinks 16.674       High
cufflinks 13.411        
cufflinks 3.349        
cufflinks 5.356        
cufflinks 5.239        
cufflinks 12.79        
cufflinks 4.268        

0 Strain