Gene : Pp3c19_19440 P. patens v3.3
Defline:  (1 of 2) PF14604//PF16746 - Variant SH3 domain (SH3_9) // BAR domain of APPL family (BAR_3) Genomic Order:  894
Name:  ? Pp3c19_19440 Secondary Identifier:  ? PAC:32937970
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_19440 0.5kb upstream 0.5kb upstream 4766 true Chr19: 12914841-12919606 Physcomitrium patens
Pp3c19_19440 0.5kb upstream 0.5kb upstream 500 false Chr19: 12919107-12919606 Physcomitrium patens
Pp3c19_19440 0.5kb downstream 0.5kb downstream 4766 true Chr19: 12914341-12919106 Physcomitrium patens
Pp3c19_19440 0.5kb downstream 0.5kb downstream 500 false Chr19: 12914341-12914840 Physcomitrium patens
Pp3c19_19440 1.0kb upstream 1.0kb upstream 5266 true Chr19: 12914841-12920106 Physcomitrium patens
Pp3c19_19440 1.0kb upstream 1.0kb upstream 1000 false Chr19: 12919107-12920106 Physcomitrium patens
Pp3c19_19440 1.0kb downstream 1.0kb downstream 5266 true Chr19: 12913841-12919106 Physcomitrium patens
Pp3c19_19440 1.0kb downstream 1.0kb downstream 1000 false Chr19: 12913841-12914840 Physcomitrium patens
Pp3c19_19440 2.0kb upstream 2.0kb upstream 6266 true Chr19: 12914841-12921106 Physcomitrium patens
Pp3c19_19440 2.0kb upstream 2.0kb upstream 2000 false Chr19: 12919107-12921106 Physcomitrium patens
Pp3c19_19440 2.0kb downstream 2.0kb downstream 6266 true Chr19: 12912841-12919106 Physcomitrium patens
Pp3c19_19440 2.0kb downstream 2.0kb downstream 2000 false Chr19: 12912841-12914840 Physcomitrium patens
Pp3c19_19440 5.0kb upstream 5.0kb upstream 9266 true Chr19: 12914841-12924106 Physcomitrium patens
Pp3c19_19440 5.0kb upstream 5.0kb upstream 5000 false Chr19: 12919107-12924106 Physcomitrium patens
Pp3c19_19440 5.0kb downstream 5.0kb downstream 9266 true Chr19: 12909841-12919106 Physcomitrium patens
Pp3c19_19440 5.0kb downstream 5.0kb downstream 5000 false Chr19: 12909841-12914840 Physcomitrium patens
Pp3c19_19440 10.0kb upstream 10.0kb upstream 14266 true Chr19: 12914841-12929106 Physcomitrium patens
Pp3c19_19440 10.0kb upstream 10.0kb upstream 10000 false Chr19: 12919107-12929106 Physcomitrium patens
Pp3c19_19440 10.0kb downstream 10.0kb downstream 14266 true Chr19: 12904841-12919106 Physcomitrium patens
Pp3c19_19440 10.0kb downstream 10.0kb downstream 10000 false Chr19: 12904841-12914840 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121352533 5274 Embryophyte View MSA
123382849 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.736       High
cufflinks 3.312        
cufflinks 6.674        
cufflinks 3.245        
cufflinks 2.444        
cufflinks 20.025     High High
cufflinks 3.833        
cufflinks 6.119        
cufflinks 1.297       Low
cufflinks 3.646        
cufflinks 6.125        
cufflinks 5.683        
cufflinks 5.467        
cufflinks 3.124        
cufflinks 3.206        
cufflinks 2.986        
cufflinks 5.698        
cufflinks 3.656        
cufflinks 4.639        
cufflinks 2.303        
cufflinks 3.183        
cufflinks 5.379        
cufflinks 1.244       Low
cufflinks 4.565        
cufflinks 1.467       Low
cufflinks 4.943        
cufflinks 2.428        
cufflinks 9.822       High
cufflinks 3.706        
cufflinks 11.869       High

0 Strain