Gene : Pp3c19_6630 P. patens v3.3
Genomic Order:  329 Name:  ? Pp3c19_6630
Secondary Identifier:  ? PAC:32938392
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_6630 0.5kb upstream 0.5kb upstream 2797 true Chr19: 3858420-3861216 Physcomitrium patens
Pp3c19_6630 0.5kb upstream 0.5kb upstream 500 false Chr19: 3858420-3858919 Physcomitrium patens
Pp3c19_6630 0.5kb downstream 0.5kb downstream 2797 true Chr19: 3858920-3861716 Physcomitrium patens
Pp3c19_6630 0.5kb downstream 0.5kb downstream 500 false Chr19: 3861217-3861716 Physcomitrium patens
Pp3c19_6630 1.0kb upstream 1.0kb upstream 3297 true Chr19: 3857920-3861216 Physcomitrium patens
Pp3c19_6630 1.0kb upstream 1.0kb upstream 1000 false Chr19: 3857920-3858919 Physcomitrium patens
Pp3c19_6630 1.0kb downstream 1.0kb downstream 3297 true Chr19: 3858920-3862216 Physcomitrium patens
Pp3c19_6630 1.0kb downstream 1.0kb downstream 1000 false Chr19: 3861217-3862216 Physcomitrium patens
Pp3c19_6630 2.0kb upstream 2.0kb upstream 4297 true Chr19: 3856920-3861216 Physcomitrium patens
Pp3c19_6630 2.0kb upstream 2.0kb upstream 2000 false Chr19: 3856920-3858919 Physcomitrium patens
Pp3c19_6630 2.0kb downstream 2.0kb downstream 4297 true Chr19: 3858920-3863216 Physcomitrium patens
Pp3c19_6630 2.0kb downstream 2.0kb downstream 2000 false Chr19: 3861217-3863216 Physcomitrium patens
Pp3c19_6630 5.0kb upstream 5.0kb upstream 7297 true Chr19: 3853920-3861216 Physcomitrium patens
Pp3c19_6630 5.0kb upstream 5.0kb upstream 5000 false Chr19: 3853920-3858919 Physcomitrium patens
Pp3c19_6630 5.0kb downstream 5.0kb downstream 7297 true Chr19: 3858920-3866216 Physcomitrium patens
Pp3c19_6630 5.0kb downstream 5.0kb downstream 5000 false Chr19: 3861217-3866216 Physcomitrium patens
Pp3c19_6630 10.0kb upstream 10.0kb upstream 12297 true Chr19: 3848920-3861216 Physcomitrium patens
Pp3c19_6630 10.0kb upstream 10.0kb upstream 10000 false Chr19: 3848920-3858919 Physcomitrium patens
Pp3c19_6630 10.0kb downstream 10.0kb downstream 12297 true Chr19: 3858920-3871216 Physcomitrium patens
Pp3c19_6630 10.0kb downstream 10.0kb downstream 10000 false Chr19: 3861217-3871216 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121329952 5274 Embryophyte Singleton cluster - no MSA
123366936 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.075        
cufflinks 0.061     Low  
cufflinks 0.041     Low  
cufflinks 0.26       High
cufflinks 0.057     Low  
cufflinks 0.025     Low Low
cufflinks 0.201       High
cufflinks 0.041     Low  
cufflinks 0.276       High
cufflinks 0.057     Low  
cufflinks 0.042     Low  
cufflinks 0.085     Low  
cufflinks 0.03     Low Low
cufflinks 0.722       High
cufflinks 0.03     Low Low
cufflinks 0.02     Low Low
cufflinks 0.09     Low  
cufflinks 0.073     Low  
cufflinks 0.056     Low  
cufflinks 0.213       High
cufflinks 0.017     Low Low
cufflinks 0.274       High
cufflinks 0.032     Low Low
cufflinks 0.347       High
cufflinks 0.085     Low  
cufflinks 0.071     Low  
cufflinks 0.046     Low  
cufflinks 0.189        
cufflinks 0.063     Low  
cufflinks 0.144        

0 Strain