Gene : Pp3c20_11540 P. patens v3.3
Defline:  (1 of 1) PTHR32170:SF0 - PROTEIN T28B8.3, ISOFORM A-RELATED Genomic Order:  581
Name:  ? Pp3c20_11540 Secondary Identifier:  ? PAC:32945825
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_11540 0.5kb upstream 0.5kb upstream 14525 true Chr20: 7387499-7402023 Physcomitrium patens
Pp3c20_11540 0.5kb upstream 0.5kb upstream 500 false Chr20: 7401524-7402023 Physcomitrium patens
Pp3c20_11540 0.5kb downstream 0.5kb downstream 14525 true Chr20: 7386999-7401523 Physcomitrium patens
Pp3c20_11540 0.5kb downstream 0.5kb downstream 500 false Chr20: 7386999-7387498 Physcomitrium patens
Pp3c20_11540 1.0kb upstream 1.0kb upstream 15025 true Chr20: 7387499-7402523 Physcomitrium patens
Pp3c20_11540 1.0kb upstream 1.0kb upstream 1000 false Chr20: 7401524-7402523 Physcomitrium patens
Pp3c20_11540 1.0kb downstream 1.0kb downstream 15025 true Chr20: 7386499-7401523 Physcomitrium patens
Pp3c20_11540 1.0kb downstream 1.0kb downstream 1000 false Chr20: 7386499-7387498 Physcomitrium patens
Pp3c20_11540 2.0kb upstream 2.0kb upstream 16025 true Chr20: 7387499-7403523 Physcomitrium patens
Pp3c20_11540 2.0kb upstream 2.0kb upstream 2000 false Chr20: 7401524-7403523 Physcomitrium patens
Pp3c20_11540 2.0kb downstream 2.0kb downstream 16025 true Chr20: 7385499-7401523 Physcomitrium patens
Pp3c20_11540 2.0kb downstream 2.0kb downstream 2000 false Chr20: 7385499-7387498 Physcomitrium patens
Pp3c20_11540 5.0kb upstream 5.0kb upstream 19025 true Chr20: 7387499-7406523 Physcomitrium patens
Pp3c20_11540 5.0kb upstream 5.0kb upstream 5000 false Chr20: 7401524-7406523 Physcomitrium patens
Pp3c20_11540 5.0kb downstream 5.0kb downstream 19025 true Chr20: 7382499-7401523 Physcomitrium patens
Pp3c20_11540 5.0kb downstream 5.0kb downstream 5000 false Chr20: 7382499-7387498 Physcomitrium patens
Pp3c20_11540 10.0kb upstream 10.0kb upstream 24025 true Chr20: 7387499-7411523 Physcomitrium patens
Pp3c20_11540 10.0kb upstream 10.0kb upstream 10000 false Chr20: 7401524-7411523 Physcomitrium patens
Pp3c20_11540 10.0kb downstream 10.0kb downstream 24025 true Chr20: 7377499-7401523 Physcomitrium patens
Pp3c20_11540 10.0kb downstream 10.0kb downstream 10000 false Chr20: 7377499-7387498 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345239 5274 Embryophyte View MSA
123424572 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 94.238     High High
cufflinks 20.185     High  
cufflinks 18.319       Low
cufflinks 36.512     High  
cufflinks 24.964     High  
cufflinks 18.468       Low
cufflinks 64.28     High High
cufflinks 17.169       Low
cufflinks 28.471     High  
cufflinks 53.546     High High
cufflinks 29.335     High  
cufflinks 26.416     High  
cufflinks 26.858     High  
cufflinks 27.895     High  
cufflinks 21.808     High  
cufflinks 22.938     High  
cufflinks 19.321     High Low
cufflinks 33.607     High  
cufflinks 26.594     High  
cufflinks 39.841     High  
cufflinks 27.911     High  
cufflinks 51.299     High High
cufflinks 26.062     High  
cufflinks 18.373       Low
cufflinks 33.548     High  
cufflinks 28.651     High  
cufflinks 22.232     High  
cufflinks 38.342     High  
cufflinks 22.984     High  
cufflinks 23.472     High  

0 Strain