Gene : Pp3c20_11030 P. patens v3.3
Genomic Order:  569 Name:  ? Pp3c20_11030
Secondary Identifier:  ? PAC:32946656
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_11030 0.5kb upstream 0.5kb upstream 1885 true Chr20: 6971521-6973405 Physcomitrium patens
Pp3c20_11030 0.5kb upstream 0.5kb upstream 500 false Chr20: 6971521-6972020 Physcomitrium patens
Pp3c20_11030 0.5kb downstream 0.5kb downstream 1885 true Chr20: 6972021-6973905 Physcomitrium patens
Pp3c20_11030 0.5kb downstream 0.5kb downstream 500 false Chr20: 6973406-6973905 Physcomitrium patens
Pp3c20_11030 1.0kb upstream 1.0kb upstream 2385 true Chr20: 6971021-6973405 Physcomitrium patens
Pp3c20_11030 1.0kb upstream 1.0kb upstream 1000 false Chr20: 6971021-6972020 Physcomitrium patens
Pp3c20_11030 1.0kb downstream 1.0kb downstream 2385 true Chr20: 6972021-6974405 Physcomitrium patens
Pp3c20_11030 1.0kb downstream 1.0kb downstream 1000 false Chr20: 6973406-6974405 Physcomitrium patens
Pp3c20_11030 2.0kb upstream 2.0kb upstream 3385 true Chr20: 6970021-6973405 Physcomitrium patens
Pp3c20_11030 2.0kb upstream 2.0kb upstream 2000 false Chr20: 6970021-6972020 Physcomitrium patens
Pp3c20_11030 2.0kb downstream 2.0kb downstream 3385 true Chr20: 6972021-6975405 Physcomitrium patens
Pp3c20_11030 2.0kb downstream 2.0kb downstream 2000 false Chr20: 6973406-6975405 Physcomitrium patens
Pp3c20_11030 5.0kb upstream 5.0kb upstream 6385 true Chr20: 6967021-6973405 Physcomitrium patens
Pp3c20_11030 5.0kb upstream 5.0kb upstream 5000 false Chr20: 6967021-6972020 Physcomitrium patens
Pp3c20_11030 5.0kb downstream 5.0kb downstream 6385 true Chr20: 6972021-6978405 Physcomitrium patens
Pp3c20_11030 5.0kb downstream 5.0kb downstream 5000 false Chr20: 6973406-6978405 Physcomitrium patens
Pp3c20_11030 10.0kb upstream 10.0kb upstream 11385 true Chr20: 6962021-6973405 Physcomitrium patens
Pp3c20_11030 10.0kb upstream 10.0kb upstream 10000 false Chr20: 6962021-6972020 Physcomitrium patens
Pp3c20_11030 10.0kb downstream 10.0kb downstream 11385 true Chr20: 6972021-6983405 Physcomitrium patens
Pp3c20_11030 10.0kb downstream 10.0kb downstream 10000 false Chr20: 6973406-6983405 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331051 5274 Embryophyte Singleton cluster - no MSA
123368001 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.05     Low  
cufflinks 0.103        
cufflinks 0.093     Low  
cufflinks 0.282       High
cufflinks 0.168        
cufflinks 0.012     Low Low
cufflinks 0.171        
cufflinks 0.041     Low Low
cufflinks 0.079        
cufflinks 0.14        
cufflinks 0.266       High
cufflinks 0.07     Low  
cufflinks 0.021     Low Low
cufflinks 0.081     Low  
cufflinks 0.078        
cufflinks 0.055     Low  
cufflinks 0.136        
cufflinks 0.162        
cufflinks 0.184        
cufflinks 0.196        
cufflinks 0.079     Low  
cufflinks 0.085        
cufflinks 0.222        
cufflinks 0.015     Low Low
cufflinks 0.053     Low  
cufflinks 0.155        
cufflinks 0.276       High
cufflinks 0.407       High
cufflinks 0.148        
cufflinks 0.075     Low  

0 Strain