Gene : Pp3c20_12680 P. patens v3.3
Defline:  (1 of 1) PTHR23105//PTHR23105:SF51 - RIBOSOMAL PROTEIN L7AE FAMILY MEMBER Genomic Order:  624
Name:  ? Pp3c20_12680 Secondary Identifier:  ? PAC:32947674
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

11 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_12680 0.5kb upstream 0.5kb upstream 5233 true Chr20: 8178013-8183245 Physcomitrium patens
Pp3c20_12680 0.5kb upstream 0.5kb upstream 500 false Chr20: 8182746-8183245 Physcomitrium patens
Pp3c20_12680 0.5kb downstream 0.5kb downstream 5233 true Chr20: 8177513-8182745 Physcomitrium patens
Pp3c20_12680 0.5kb downstream 0.5kb downstream 500 false Chr20: 8177513-8178012 Physcomitrium patens
Pp3c20_12680 1.0kb upstream 1.0kb upstream 5733 true Chr20: 8178013-8183745 Physcomitrium patens
Pp3c20_12680 1.0kb upstream 1.0kb upstream 1000 false Chr20: 8182746-8183745 Physcomitrium patens
Pp3c20_12680 1.0kb downstream 1.0kb downstream 5733 true Chr20: 8177013-8182745 Physcomitrium patens
Pp3c20_12680 1.0kb downstream 1.0kb downstream 1000 false Chr20: 8177013-8178012 Physcomitrium patens
Pp3c20_12680 2.0kb upstream 2.0kb upstream 6733 true Chr20: 8178013-8184745 Physcomitrium patens
Pp3c20_12680 2.0kb upstream 2.0kb upstream 2000 false Chr20: 8182746-8184745 Physcomitrium patens
Pp3c20_12680 2.0kb downstream 2.0kb downstream 6733 true Chr20: 8176013-8182745 Physcomitrium patens
Pp3c20_12680 2.0kb downstream 2.0kb downstream 2000 false Chr20: 8176013-8178012 Physcomitrium patens
Pp3c20_12680 5.0kb upstream 5.0kb upstream 9733 true Chr20: 8178013-8187745 Physcomitrium patens
Pp3c20_12680 5.0kb upstream 5.0kb upstream 5000 false Chr20: 8182746-8187745 Physcomitrium patens
Pp3c20_12680 5.0kb downstream 5.0kb downstream 9733 true Chr20: 8173013-8182745 Physcomitrium patens
Pp3c20_12680 5.0kb downstream 5.0kb downstream 5000 false Chr20: 8173013-8178012 Physcomitrium patens
Pp3c20_12680 10.0kb upstream 10.0kb upstream 14733 true Chr20: 8178013-8192745 Physcomitrium patens
Pp3c20_12680 10.0kb upstream 10.0kb upstream 10000 false Chr20: 8182746-8192745 Physcomitrium patens
Pp3c20_12680 10.0kb downstream 10.0kb downstream 14733 true Chr20: 8168013-8182745 Physcomitrium patens
Pp3c20_12680 10.0kb downstream 10.0kb downstream 10000 false Chr20: 8168013-8178012 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348791 5274 Embryophyte View MSA
123427528 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.909        
cufflinks 0.794       Low
cufflinks 1.301        
cufflinks 1.2        
cufflinks 1.217        
cufflinks 1.478        
cufflinks 1.045        
cufflinks 1.455        
cufflinks 0.898       Low
cufflinks 1.347        
cufflinks 1.636       High
cufflinks 0.906        
cufflinks 1.463        
cufflinks 1.647       High
cufflinks 1.545       High
cufflinks 1.399        
cufflinks 1.254        
cufflinks 0.644       Low
cufflinks 1.401        
cufflinks 1.067        
cufflinks 1.242        
cufflinks 1.321        
cufflinks 1.604       High
cufflinks 0.919        
cufflinks 1.194        
cufflinks 1.144        
cufflinks 1.622       High
cufflinks 1.578       High
cufflinks 0.887       Low
cufflinks 0.902        

0 Strain