Gene : Pp3c20_4820 P. patens v3.3
Defline:  (1 of 2) PTHR32285:SF5 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 16 Genomic Order:  257
Name:  ? Pp3c20_4820 Secondary Identifier:  ? PAC:32947484
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_4820 0.5kb upstream 0.5kb upstream 5496 true Chr20: 2877413-2882908 Physcomitrium patens
Pp3c20_4820 0.5kb upstream 0.5kb upstream 500 false Chr20: 2877413-2877912 Physcomitrium patens
Pp3c20_4820 0.5kb downstream 0.5kb downstream 5496 true Chr20: 2877913-2883408 Physcomitrium patens
Pp3c20_4820 0.5kb downstream 0.5kb downstream 500 false Chr20: 2882909-2883408 Physcomitrium patens
Pp3c20_4820 1.0kb upstream 1.0kb upstream 5996 true Chr20: 2876913-2882908 Physcomitrium patens
Pp3c20_4820 1.0kb upstream 1.0kb upstream 1000 false Chr20: 2876913-2877912 Physcomitrium patens
Pp3c20_4820 1.0kb downstream 1.0kb downstream 5996 true Chr20: 2877913-2883908 Physcomitrium patens
Pp3c20_4820 1.0kb downstream 1.0kb downstream 1000 false Chr20: 2882909-2883908 Physcomitrium patens
Pp3c20_4820 2.0kb upstream 2.0kb upstream 6996 true Chr20: 2875913-2882908 Physcomitrium patens
Pp3c20_4820 2.0kb upstream 2.0kb upstream 2000 false Chr20: 2875913-2877912 Physcomitrium patens
Pp3c20_4820 2.0kb downstream 2.0kb downstream 6996 true Chr20: 2877913-2884908 Physcomitrium patens
Pp3c20_4820 2.0kb downstream 2.0kb downstream 2000 false Chr20: 2882909-2884908 Physcomitrium patens
Pp3c20_4820 5.0kb upstream 5.0kb upstream 9996 true Chr20: 2872913-2882908 Physcomitrium patens
Pp3c20_4820 5.0kb upstream 5.0kb upstream 5000 false Chr20: 2872913-2877912 Physcomitrium patens
Pp3c20_4820 5.0kb downstream 5.0kb downstream 9996 true Chr20: 2877913-2887908 Physcomitrium patens
Pp3c20_4820 5.0kb downstream 5.0kb downstream 5000 false Chr20: 2882909-2887908 Physcomitrium patens
Pp3c20_4820 10.0kb upstream 10.0kb upstream 14996 true Chr20: 2867913-2882908 Physcomitrium patens
Pp3c20_4820 10.0kb upstream 10.0kb upstream 10000 false Chr20: 2867913-2877912 Physcomitrium patens
Pp3c20_4820 10.0kb downstream 10.0kb downstream 14996 true Chr20: 2877913-2892908 Physcomitrium patens
Pp3c20_4820 10.0kb downstream 10.0kb downstream 10000 false Chr20: 2882909-2892908 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331176 5274 Embryophyte Singleton cluster - no MSA
123368124 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.2        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.183        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.222        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.614        
cufflinks 0.002     Low Low
cufflinks 4.746       High
cufflinks 0.152        
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.069        
cufflinks 0.145        
cufflinks 0.981        
cufflinks 0.004     Low Low
cufflinks 1.506        
cufflinks 1.322        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 11.259       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 12.942       High
cufflinks 0.005     Low Low
cufflinks 0.472        
cufflinks 0.016     Low Low
cufflinks 0.013     Low Low
cufflinks 1.111        

0 Strain