Gene : Pp3c20_580 P. patens v3.3
Defline:  (1 of 27) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  40
Name:  ? Pp3c20_580 Secondary Identifier:  ? PAC:32946503
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_580 0.5kb upstream 0.5kb upstream 1223 true Chr20: 268630-269852 Physcomitrium patens
Pp3c20_580 0.5kb upstream 0.5kb upstream 500 false Chr20: 269353-269852 Physcomitrium patens
Pp3c20_580 0.5kb downstream 0.5kb downstream 1223 true Chr20: 268130-269352 Physcomitrium patens
Pp3c20_580 0.5kb downstream 0.5kb downstream 500 false Chr20: 268130-268629 Physcomitrium patens
Pp3c20_580 1.0kb upstream 1.0kb upstream 1723 true Chr20: 268630-270352 Physcomitrium patens
Pp3c20_580 1.0kb upstream 1.0kb upstream 1000 false Chr20: 269353-270352 Physcomitrium patens
Pp3c20_580 1.0kb downstream 1.0kb downstream 1723 true Chr20: 267630-269352 Physcomitrium patens
Pp3c20_580 1.0kb downstream 1.0kb downstream 1000 false Chr20: 267630-268629 Physcomitrium patens
Pp3c20_580 2.0kb upstream 2.0kb upstream 2723 true Chr20: 268630-271352 Physcomitrium patens
Pp3c20_580 2.0kb upstream 2.0kb upstream 2000 false Chr20: 269353-271352 Physcomitrium patens
Pp3c20_580 2.0kb downstream 2.0kb downstream 2723 true Chr20: 266630-269352 Physcomitrium patens
Pp3c20_580 2.0kb downstream 2.0kb downstream 2000 false Chr20: 266630-268629 Physcomitrium patens
Pp3c20_580 5.0kb upstream 5.0kb upstream 5723 true Chr20: 268630-274352 Physcomitrium patens
Pp3c20_580 5.0kb upstream 5.0kb upstream 5000 false Chr20: 269353-274352 Physcomitrium patens
Pp3c20_580 5.0kb downstream 5.0kb downstream 5723 true Chr20: 263630-269352 Physcomitrium patens
Pp3c20_580 5.0kb downstream 5.0kb downstream 5000 false Chr20: 263630-268629 Physcomitrium patens
Pp3c20_580 10.0kb upstream 10.0kb upstream 10723 true Chr20: 268630-279352 Physcomitrium patens
Pp3c20_580 10.0kb upstream 10.0kb upstream 10000 false Chr20: 269353-279352 Physcomitrium patens
Pp3c20_580 10.0kb downstream 10.0kb downstream 10723 true Chr20: 258630-269352 Physcomitrium patens
Pp3c20_580 10.0kb downstream 10.0kb downstream 10000 false Chr20: 258630-268629 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336934 5274 Embryophyte View MSA
123373736 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.067     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain