Gene : Pp3c20_9520 P. patens v3.3
Defline:  (1 of 4) PTHR33415:SF3 - EMB514 Genomic Order:  500
Name:  ? Pp3c20_9520 Secondary Identifier:  ? PAC:32947844
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_9520 0.5kb upstream 0.5kb upstream 2757 true Chr20: 5776134-5778890 Physcomitrium patens
Pp3c20_9520 0.5kb upstream 0.5kb upstream 500 false Chr20: 5778391-5778890 Physcomitrium patens
Pp3c20_9520 0.5kb downstream 0.5kb downstream 2757 true Chr20: 5775634-5778390 Physcomitrium patens
Pp3c20_9520 0.5kb downstream 0.5kb downstream 500 false Chr20: 5775634-5776133 Physcomitrium patens
Pp3c20_9520 1.0kb upstream 1.0kb upstream 3257 true Chr20: 5776134-5779390 Physcomitrium patens
Pp3c20_9520 1.0kb upstream 1.0kb upstream 1000 false Chr20: 5778391-5779390 Physcomitrium patens
Pp3c20_9520 1.0kb downstream 1.0kb downstream 3257 true Chr20: 5775134-5778390 Physcomitrium patens
Pp3c20_9520 1.0kb downstream 1.0kb downstream 1000 false Chr20: 5775134-5776133 Physcomitrium patens
Pp3c20_9520 2.0kb upstream 2.0kb upstream 4257 true Chr20: 5776134-5780390 Physcomitrium patens
Pp3c20_9520 2.0kb upstream 2.0kb upstream 2000 false Chr20: 5778391-5780390 Physcomitrium patens
Pp3c20_9520 2.0kb downstream 2.0kb downstream 4257 true Chr20: 5774134-5778390 Physcomitrium patens
Pp3c20_9520 2.0kb downstream 2.0kb downstream 2000 false Chr20: 5774134-5776133 Physcomitrium patens
Pp3c20_9520 5.0kb upstream 5.0kb upstream 7257 true Chr20: 5776134-5783390 Physcomitrium patens
Pp3c20_9520 5.0kb upstream 5.0kb upstream 5000 false Chr20: 5778391-5783390 Physcomitrium patens
Pp3c20_9520 5.0kb downstream 5.0kb downstream 7257 true Chr20: 5771134-5778390 Physcomitrium patens
Pp3c20_9520 5.0kb downstream 5.0kb downstream 5000 false Chr20: 5771134-5776133 Physcomitrium patens
Pp3c20_9520 10.0kb upstream 10.0kb upstream 12257 true Chr20: 5776134-5788390 Physcomitrium patens
Pp3c20_9520 10.0kb upstream 10.0kb upstream 10000 false Chr20: 5778391-5788390 Physcomitrium patens
Pp3c20_9520 10.0kb downstream 10.0kb downstream 12257 true Chr20: 5766134-5778390 Physcomitrium patens
Pp3c20_9520 10.0kb downstream 10.0kb downstream 10000 false Chr20: 5766134-5776133 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348604 5274 Embryophyte View MSA
123426725 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.498        
cufflinks 7.258        
cufflinks 8.564        
cufflinks 9.286        
cufflinks 6.465        
cufflinks 3.177       Low
cufflinks 13.227        
cufflinks 7.048        
cufflinks 10.797        
cufflinks 13.58       High
cufflinks 4.687        
cufflinks 6.229        
cufflinks 14.29       High
cufflinks 6.74        
cufflinks 1.904       Low
cufflinks 8.013        
cufflinks 12.562        
cufflinks 20.557       High
cufflinks 2.557       Low
cufflinks 13.414        
cufflinks 8.577        
cufflinks 14.397       High
cufflinks 12.358        
cufflinks 3.211       Low
cufflinks 8.052        
cufflinks 11.187        
cufflinks 5.171        
cufflinks 4.098       Low
cufflinks 3.977       Low
cufflinks 9.694        

0 Strain