Gene : Pp3c21_17920 P. patens v3.3
Defline:  (1 of 4) PF01476//PF01551 - LysM domain (LysM) // Peptidase family M23 (Peptidase_M23) Genomic Order:  840
Name:  ? Pp3c21_17920 Secondary Identifier:  ? PAC:32916104
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_17920 0.5kb upstream 0.5kb upstream 7078 true Chr21: 11573138-11580215 Physcomitrium patens
Pp3c21_17920 0.5kb upstream 0.5kb upstream 500 false Chr21: 11573138-11573637 Physcomitrium patens
Pp3c21_17920 0.5kb downstream 0.5kb downstream 7078 true Chr21: 11573638-11580715 Physcomitrium patens
Pp3c21_17920 0.5kb downstream 0.5kb downstream 500 false Chr21: 11580216-11580715 Physcomitrium patens
Pp3c21_17920 1.0kb upstream 1.0kb upstream 7578 true Chr21: 11572638-11580215 Physcomitrium patens
Pp3c21_17920 1.0kb upstream 1.0kb upstream 1000 false Chr21: 11572638-11573637 Physcomitrium patens
Pp3c21_17920 1.0kb downstream 1.0kb downstream 7578 true Chr21: 11573638-11581215 Physcomitrium patens
Pp3c21_17920 1.0kb downstream 1.0kb downstream 1000 false Chr21: 11580216-11581215 Physcomitrium patens
Pp3c21_17920 2.0kb upstream 2.0kb upstream 8578 true Chr21: 11571638-11580215 Physcomitrium patens
Pp3c21_17920 2.0kb upstream 2.0kb upstream 2000 false Chr21: 11571638-11573637 Physcomitrium patens
Pp3c21_17920 2.0kb downstream 2.0kb downstream 8578 true Chr21: 11573638-11582215 Physcomitrium patens
Pp3c21_17920 2.0kb downstream 2.0kb downstream 2000 false Chr21: 11580216-11582215 Physcomitrium patens
Pp3c21_17920 5.0kb upstream 5.0kb upstream 11578 true Chr21: 11568638-11580215 Physcomitrium patens
Pp3c21_17920 5.0kb upstream 5.0kb upstream 5000 false Chr21: 11568638-11573637 Physcomitrium patens
Pp3c21_17920 5.0kb downstream 5.0kb downstream 11578 true Chr21: 11573638-11585215 Physcomitrium patens
Pp3c21_17920 5.0kb downstream 5.0kb downstream 5000 false Chr21: 11580216-11585215 Physcomitrium patens
Pp3c21_17920 10.0kb upstream 10.0kb upstream 16578 true Chr21: 11563638-11580215 Physcomitrium patens
Pp3c21_17920 10.0kb upstream 10.0kb upstream 10000 false Chr21: 11563638-11573637 Physcomitrium patens
Pp3c21_17920 10.0kb downstream 10.0kb downstream 16578 true Chr21: 11573638-11590215 Physcomitrium patens
Pp3c21_17920 10.0kb downstream 10.0kb downstream 10000 false Chr21: 11580216-11590215 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343080 5274 Embryophyte View MSA
123379426 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.618        
cufflinks 8.188        
cufflinks 5.651        
cufflinks 9.933        
cufflinks 0.438       Low
cufflinks 4.296        
cufflinks 1.842       Low
cufflinks 10.384        
cufflinks 0.455       Low
cufflinks 7.594        
cufflinks 4.206        
cufflinks 4.127        
cufflinks 4.245        
cufflinks 9.354        
cufflinks 7.534        
cufflinks 9.406        
cufflinks 8.483        
cufflinks 3.906        
cufflinks 1.758       Low
cufflinks 8.322        
cufflinks 7.458        
cufflinks 5.789        
cufflinks 5.343        
cufflinks 5.541        
cufflinks 6.515        
cufflinks 9.555        
cufflinks 2.851        
cufflinks 3.539        
cufflinks 1.819       Low
cufflinks 9.971        

0 Strain