Gene : Pp3c21_19110 P. patens v3.3
Defline:  (1 of 1) PTHR13345:SF4 - PROTEIN UXT Genomic Order:  887
Name:  ? Pp3c21_19110 Secondary Identifier:  ? PAC:32914683
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_19110 0.5kb upstream 0.5kb upstream 2380 true Chr21: 12250452-12252831 Physcomitrium patens
Pp3c21_19110 0.5kb upstream 0.5kb upstream 500 false Chr21: 12250452-12250951 Physcomitrium patens
Pp3c21_19110 0.5kb downstream 0.5kb downstream 2380 true Chr21: 12250952-12253331 Physcomitrium patens
Pp3c21_19110 0.5kb downstream 0.5kb downstream 500 false Chr21: 12252832-12253331 Physcomitrium patens
Pp3c21_19110 1.0kb upstream 1.0kb upstream 2880 true Chr21: 12249952-12252831 Physcomitrium patens
Pp3c21_19110 1.0kb upstream 1.0kb upstream 1000 false Chr21: 12249952-12250951 Physcomitrium patens
Pp3c21_19110 1.0kb downstream 1.0kb downstream 2880 true Chr21: 12250952-12253831 Physcomitrium patens
Pp3c21_19110 1.0kb downstream 1.0kb downstream 1000 false Chr21: 12252832-12253831 Physcomitrium patens
Pp3c21_19110 2.0kb upstream 2.0kb upstream 3880 true Chr21: 12248952-12252831 Physcomitrium patens
Pp3c21_19110 2.0kb upstream 2.0kb upstream 2000 false Chr21: 12248952-12250951 Physcomitrium patens
Pp3c21_19110 2.0kb downstream 2.0kb downstream 3880 true Chr21: 12250952-12254831 Physcomitrium patens
Pp3c21_19110 2.0kb downstream 2.0kb downstream 2000 false Chr21: 12252832-12254831 Physcomitrium patens
Pp3c21_19110 5.0kb upstream 5.0kb upstream 6880 true Chr21: 12245952-12252831 Physcomitrium patens
Pp3c21_19110 5.0kb upstream 5.0kb upstream 5000 false Chr21: 12245952-12250951 Physcomitrium patens
Pp3c21_19110 5.0kb downstream 5.0kb downstream 6880 true Chr21: 12250952-12257831 Physcomitrium patens
Pp3c21_19110 5.0kb downstream 5.0kb downstream 5000 false Chr21: 12252832-12257831 Physcomitrium patens
Pp3c21_19110 10.0kb upstream 10.0kb upstream 11880 true Chr21: 12240952-12252831 Physcomitrium patens
Pp3c21_19110 10.0kb upstream 10.0kb upstream 10000 false Chr21: 12240952-12250951 Physcomitrium patens
Pp3c21_19110 10.0kb downstream 10.0kb downstream 11880 true Chr21: 12250952-12262831 Physcomitrium patens
Pp3c21_19110 10.0kb downstream 10.0kb downstream 10000 false Chr21: 12252832-12262831 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347862 5274 Embryophyte View MSA
123425882 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.369       Low
cufflinks 17.015        
cufflinks 16.713        
cufflinks 34.002     High High
cufflinks 21.588        
cufflinks 18.567        
cufflinks 21.257     High  
cufflinks 23.503     High  
cufflinks 30.95     High  
cufflinks 15.704     High Low
cufflinks 35.023     High High
cufflinks 27.636     High  
cufflinks 35.035     High High
cufflinks 16.12        
cufflinks 24.991     High  
cufflinks 22.001        
cufflinks 14.553       Low
cufflinks 16.306        
cufflinks 23.548     High  
cufflinks 54.582     High High
cufflinks 12.489     High Low
cufflinks 25.285     High  
cufflinks 31.445     High  
cufflinks 23.657     High  
cufflinks 14.458       Low
cufflinks 18.373        
cufflinks 22.173     High  
cufflinks 52.823     High High
cufflinks 26.39     High  
cufflinks 20.624     High  

0 Strain