Gene : Pp3c21_5880 P. patens v3.3
Defline:  (1 of 1) PTHR11079:SF73 - RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  260
Name:  ? Pp3c21_5880 Secondary Identifier:  ? PAC:32916753
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_5880 0.5kb upstream 0.5kb upstream 4358 true Chr21: 3574044-3578401 Physcomitrium patens
Pp3c21_5880 0.5kb upstream 0.5kb upstream 500 false Chr21: 3577902-3578401 Physcomitrium patens
Pp3c21_5880 0.5kb downstream 0.5kb downstream 4358 true Chr21: 3573544-3577901 Physcomitrium patens
Pp3c21_5880 0.5kb downstream 0.5kb downstream 500 false Chr21: 3573544-3574043 Physcomitrium patens
Pp3c21_5880 1.0kb upstream 1.0kb upstream 4858 true Chr21: 3574044-3578901 Physcomitrium patens
Pp3c21_5880 1.0kb upstream 1.0kb upstream 1000 false Chr21: 3577902-3578901 Physcomitrium patens
Pp3c21_5880 1.0kb downstream 1.0kb downstream 4858 true Chr21: 3573044-3577901 Physcomitrium patens
Pp3c21_5880 1.0kb downstream 1.0kb downstream 1000 false Chr21: 3573044-3574043 Physcomitrium patens
Pp3c21_5880 2.0kb upstream 2.0kb upstream 5858 true Chr21: 3574044-3579901 Physcomitrium patens
Pp3c21_5880 2.0kb upstream 2.0kb upstream 2000 false Chr21: 3577902-3579901 Physcomitrium patens
Pp3c21_5880 2.0kb downstream 2.0kb downstream 5858 true Chr21: 3572044-3577901 Physcomitrium patens
Pp3c21_5880 2.0kb downstream 2.0kb downstream 2000 false Chr21: 3572044-3574043 Physcomitrium patens
Pp3c21_5880 5.0kb upstream 5.0kb upstream 8858 true Chr21: 3574044-3582901 Physcomitrium patens
Pp3c21_5880 5.0kb upstream 5.0kb upstream 5000 false Chr21: 3577902-3582901 Physcomitrium patens
Pp3c21_5880 5.0kb downstream 5.0kb downstream 8858 true Chr21: 3569044-3577901 Physcomitrium patens
Pp3c21_5880 5.0kb downstream 5.0kb downstream 5000 false Chr21: 3569044-3574043 Physcomitrium patens
Pp3c21_5880 10.0kb upstream 10.0kb upstream 13858 true Chr21: 3574044-3587901 Physcomitrium patens
Pp3c21_5880 10.0kb upstream 10.0kb upstream 10000 false Chr21: 3577902-3587901 Physcomitrium patens
Pp3c21_5880 10.0kb downstream 10.0kb downstream 13858 true Chr21: 3564044-3577901 Physcomitrium patens
Pp3c21_5880 10.0kb downstream 10.0kb downstream 10000 false Chr21: 3564044-3574043 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344474 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.842       Low
cufflinks 5.473        
cufflinks 5.113        
cufflinks 2.994        
cufflinks 5.287        
cufflinks 4.332        
cufflinks 5.25        
cufflinks 7.235       High
cufflinks 2.084       Low
cufflinks 4.152        
cufflinks 4.444        
cufflinks 5.506        
cufflinks 5.463        
cufflinks 2.486       Low
cufflinks 2.85       Low
cufflinks 2.825       Low
cufflinks 3.818        
cufflinks 3.316        
cufflinks 3.821        
cufflinks 5.97       High
cufflinks 6.027       High
cufflinks 6.379       High
cufflinks 3.063        
cufflinks 2.484       Low
cufflinks 6.352       High
cufflinks 2.473       Low
cufflinks 6.163       High
cufflinks 4.71        
cufflinks 3.767        
cufflinks 5.901       High

0 Strain