Gene : Pp3c21_4780 P. patens v3.3
Defline:  (1 of 2) PTHR19861 - WD40 REPEAT PROTEIN SWD2 Genomic Order:  210
Name:  ? Pp3c21_4780 Secondary Identifier:  ? PAC:32916260
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_4780 0.5kb upstream 0.5kb upstream 5422 true Chr21: 3053073-3058494 Physcomitrium patens
Pp3c21_4780 0.5kb upstream 0.5kb upstream 500 false Chr21: 3057995-3058494 Physcomitrium patens
Pp3c21_4780 0.5kb downstream 0.5kb downstream 5422 true Chr21: 3052573-3057994 Physcomitrium patens
Pp3c21_4780 0.5kb downstream 0.5kb downstream 500 false Chr21: 3052573-3053072 Physcomitrium patens
Pp3c21_4780 1.0kb upstream 1.0kb upstream 5922 true Chr21: 3053073-3058994 Physcomitrium patens
Pp3c21_4780 1.0kb upstream 1.0kb upstream 1000 false Chr21: 3057995-3058994 Physcomitrium patens
Pp3c21_4780 1.0kb downstream 1.0kb downstream 5922 true Chr21: 3052073-3057994 Physcomitrium patens
Pp3c21_4780 1.0kb downstream 1.0kb downstream 1000 false Chr21: 3052073-3053072 Physcomitrium patens
Pp3c21_4780 2.0kb upstream 2.0kb upstream 6922 true Chr21: 3053073-3059994 Physcomitrium patens
Pp3c21_4780 2.0kb upstream 2.0kb upstream 2000 false Chr21: 3057995-3059994 Physcomitrium patens
Pp3c21_4780 2.0kb downstream 2.0kb downstream 6922 true Chr21: 3051073-3057994 Physcomitrium patens
Pp3c21_4780 2.0kb downstream 2.0kb downstream 2000 false Chr21: 3051073-3053072 Physcomitrium patens
Pp3c21_4780 5.0kb upstream 5.0kb upstream 9922 true Chr21: 3053073-3062994 Physcomitrium patens
Pp3c21_4780 5.0kb upstream 5.0kb upstream 5000 false Chr21: 3057995-3062994 Physcomitrium patens
Pp3c21_4780 5.0kb downstream 5.0kb downstream 9922 true Chr21: 3048073-3057994 Physcomitrium patens
Pp3c21_4780 5.0kb downstream 5.0kb downstream 5000 false Chr21: 3048073-3053072 Physcomitrium patens
Pp3c21_4780 10.0kb upstream 10.0kb upstream 14922 true Chr21: 3053073-3067994 Physcomitrium patens
Pp3c21_4780 10.0kb upstream 10.0kb upstream 10000 false Chr21: 3057995-3067994 Physcomitrium patens
Pp3c21_4780 10.0kb downstream 10.0kb downstream 14922 true Chr21: 3043073-3057994 Physcomitrium patens
Pp3c21_4780 10.0kb downstream 10.0kb downstream 10000 false Chr21: 3043073-3053072 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350180 5274 Embryophyte View MSA
123424792 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.723     High  
cufflinks 16.064       Low
cufflinks 19.471       Low
cufflinks 13.685       Low
cufflinks 27.868     High  
cufflinks 28.507     High  
cufflinks 25.822     High  
cufflinks 15.954     High Low
cufflinks 39.103     High High
cufflinks 16.316     High Low
cufflinks 31.72     High  
cufflinks 30.621     High  
cufflinks 25.88     High  
cufflinks 49.667     High High
cufflinks 29.754     High  
cufflinks 22.983     High  
cufflinks 25.434     High  
cufflinks 29.627     High  
cufflinks 26.862     High  
cufflinks 39.859     High High
cufflinks 35.153     High  
cufflinks 47.903     High High
cufflinks 28.614     High  
cufflinks 29.826     High  
cufflinks 28.887     High  
cufflinks 24.366     High  
cufflinks 23.28     High  
cufflinks 41.731     High High
cufflinks 34.4     High  
cufflinks 27.307     High  

0 Strain