Gene : Pp3c21_9030 P. patens v3.3
Defline:  (1 of 3) PF03350 - Uncharacterized protein family, UPF0114 (UPF0114) Genomic Order:  409
Name:  ? Pp3c21_9030 Secondary Identifier:  ? PAC:32914395
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_9030 0.5kb upstream 0.5kb upstream 3596 true Chr21: 5963179-5966774 Physcomitrium patens
Pp3c21_9030 0.5kb upstream 0.5kb upstream 500 false Chr21: 5966275-5966774 Physcomitrium patens
Pp3c21_9030 0.5kb downstream 0.5kb downstream 3596 true Chr21: 5962679-5966274 Physcomitrium patens
Pp3c21_9030 0.5kb downstream 0.5kb downstream 500 false Chr21: 5962679-5963178 Physcomitrium patens
Pp3c21_9030 1.0kb upstream 1.0kb upstream 4096 true Chr21: 5963179-5967274 Physcomitrium patens
Pp3c21_9030 1.0kb upstream 1.0kb upstream 1000 false Chr21: 5966275-5967274 Physcomitrium patens
Pp3c21_9030 1.0kb downstream 1.0kb downstream 4096 true Chr21: 5962179-5966274 Physcomitrium patens
Pp3c21_9030 1.0kb downstream 1.0kb downstream 1000 false Chr21: 5962179-5963178 Physcomitrium patens
Pp3c21_9030 2.0kb upstream 2.0kb upstream 5096 true Chr21: 5963179-5968274 Physcomitrium patens
Pp3c21_9030 2.0kb upstream 2.0kb upstream 2000 false Chr21: 5966275-5968274 Physcomitrium patens
Pp3c21_9030 2.0kb downstream 2.0kb downstream 5096 true Chr21: 5961179-5966274 Physcomitrium patens
Pp3c21_9030 2.0kb downstream 2.0kb downstream 2000 false Chr21: 5961179-5963178 Physcomitrium patens
Pp3c21_9030 5.0kb upstream 5.0kb upstream 8096 true Chr21: 5963179-5971274 Physcomitrium patens
Pp3c21_9030 5.0kb upstream 5.0kb upstream 5000 false Chr21: 5966275-5971274 Physcomitrium patens
Pp3c21_9030 5.0kb downstream 5.0kb downstream 8096 true Chr21: 5958179-5966274 Physcomitrium patens
Pp3c21_9030 5.0kb downstream 5.0kb downstream 5000 false Chr21: 5958179-5963178 Physcomitrium patens
Pp3c21_9030 10.0kb upstream 10.0kb upstream 13096 true Chr21: 5963179-5976274 Physcomitrium patens
Pp3c21_9030 10.0kb upstream 10.0kb upstream 10000 false Chr21: 5966275-5976274 Physcomitrium patens
Pp3c21_9030 10.0kb downstream 10.0kb downstream 13096 true Chr21: 5953179-5966274 Physcomitrium patens
Pp3c21_9030 10.0kb downstream 10.0kb downstream 10000 false Chr21: 5953179-5963178 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348495 5274 Embryophyte View MSA
123426050 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.635     High  
cufflinks 62.923     High High
cufflinks 39.391     High  
cufflinks 39.737     High  
cufflinks 32.633     High  
cufflinks 6.119       Low
cufflinks 24.704     High  
cufflinks 33.402     High  
cufflinks 32.322     High  
cufflinks 42.342     High  
cufflinks 38.589     High  
cufflinks 17.877     High Low
cufflinks 33.832     High  
cufflinks 33.301     High  
cufflinks 26.522     High  
cufflinks 50.674     High  
cufflinks 43.571     High  
cufflinks 56.126     High  
cufflinks 34.687     High  
cufflinks 32.037     High  
cufflinks 56.757     High  
cufflinks 64.255     High High
cufflinks 15.924       Low
cufflinks 46.351     High  
cufflinks 4.953       Low
cufflinks 32.085     High  
cufflinks 41.484     High  
cufflinks 46.732     High  
cufflinks 21.785     High  
cufflinks 46.964     High  

0 Strain